Analysis of interatomic Contacts of Structural Units in PDB entry:
1PV4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PV4 entry

There are 11 chains in PDB entry 1PV4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 C 3 C 4
H
 C 3 C 4
J
 C 3 C 4
K
 C 3 C 4
L
 C 3 C 4
A
 MSE 1LYS 417
B
 GLY 51LYS 417
C
 MSE 1LYS 417
D
 MSE 1LYS 417
E
 MSE 1LYS 417
F
 MSE 1LYS 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are108 helices in PDB entry 1PV4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 8Right-handed alpha
Helix 2
2
A
10 21Right-handed alpha
Helix 3
3
A
30 42Right-handed alpha
Helix 4
4
A
67 71Right-handed 310
Helix 5
5
A
82 90Right-handed alpha
Helix 6
6
A
131 135Right-handed 310
Helix 7
7
A
155 162Right-handed alpha
Helix 8
8
A
183 199Right-handed alpha
Helix 9
9
A
212 223Right-handed alpha
Helix 10
10
A
235 255Right-handed alpha
Helix 11
11
A
266 278Right-handed alpha
Helix 12
12
A
294 304Right-handed alpha
Helix 13
13
A
325 335Right-handed alpha
Helix 14
14
A
346 352Right-handed alpha
Helix 15
15
A
359 363Right-handed 310
Helix 16
16
A
367 372Right-handed 310
Helix 17
17
A
373 388Right-handed alpha
Helix 18
18
A
391 404Right-handed alpha
Helix 19
19
A
407 417Right-handed alpha
Helix 20
20
B
67 71Right-handed 310
Helix 21
21
B
82 90Right-handed alpha
Helix 22
22
B
131 135Right-handed 310
Helix 23
23
B
153 166Right-handed alpha
Helix 24
24
B
183 199Right-handed alpha
Helix 25
25
B
212 221Right-handed alpha
Helix 26
26
B
235 256Right-handed alpha
Helix 27
27
B
266 278Right-handed alpha
Helix 28
28
B
290 304Right-handed alpha
Helix 29
29
B
325 335Right-handed alpha
Helix 30
30
B
346 352Right-handed alpha
Helix 31
31
B
367 371Right-handed 310
Helix 32
32
B
373 388Right-handed alpha
Helix 33
33
B
391 406Right-handed alpha
Helix 34
34
B
411 417Right-handed alpha
Helix 35
35
C
2 7Right-handed alpha
Helix 36
36
C
10 21Right-handed alpha
Helix 37
37
C
30 41Right-handed alpha
Helix 38
38
C
82 89Right-handed alpha
Helix 39
39
C
131 135Right-handed 310
Helix 40
40
C
154 166Right-handed alpha
Helix 41
41
C
183 199Right-handed alpha
Helix 42
42
C
212 223Right-handed alpha
Helix 43
43
C
235 256Right-handed alpha
Helix 44
44
C
266 278Right-handed alpha
Helix 45
45
C
290 293Right-handed 310
Helix 46
46
C
294 304Right-handed alpha
Helix 47
47
C
325 336Right-handed alpha
Helix 48
48
C
346 352Right-handed alpha
Helix 49
49
C
359 363Right-handed 310
Helix 50
50
C
367 371Right-handed 310
Helix 51
51
C
373 388Right-handed alpha
Helix 52
52
C
391 405Right-handed alpha
Helix 53
53
C
408 413Right-handed alpha
Helix 54
54
D
2 8Right-handed alpha
Helix 55
55
D
10 20Right-handed alpha
Helix 56
56
D
30 42Right-handed alpha
Helix 57
57
D
82 90Right-handed alpha
Helix 58
58
D
131 135Right-handed 310
Helix 59
59
D
154 166Right-handed alpha
Helix 60
60
D
183 199Right-handed alpha
Helix 61
61
D
212 223Right-handed alpha
Helix 62
62
D
235 255Right-handed alpha
Helix 63
63
D
266 278Right-handed alpha
Helix 64
64
D
290 293Right-handed 310
Helix 65
65
D
294 304Right-handed alpha
Helix 66
66
D
325 334Right-handed alpha
Helix 67
67
D
346 352Right-handed alpha
Helix 68
68
D
359 363Right-handed 310
Helix 69
69
D
367 371Right-handed 310
Helix 70
70
D
373 388Right-handed alpha
Helix 71
71
D
391 404Right-handed alpha
Helix 72
72
D
408 416Right-handed alpha
Helix 73
73
E
2 8Right-handed alpha
Helix 74
74
E
10 21Right-handed alpha
Helix 75
75
E
30 42Right-handed alpha
Helix 76
76
E
67 71Right-handed 310
Helix 77
77
E
82 89Right-handed alpha
Helix 78
78
E
131 135Right-handed 310
Helix 79
79
E
155 166Right-handed alpha
Helix 80
80
E
183 199Right-handed alpha
Helix 81
81
E
212 223Right-handed alpha
Helix 82
82
E
235 255Right-handed alpha
Helix 83
83
E
266 278Right-handed alpha
Helix 84
84
E
294 303Right-handed alpha
Helix 85
85
E
325 336Right-handed alpha
Helix 86
86
E
346 352Right-handed alpha
Helix 87
87
E
359 363Right-handed 310
Helix 88
88
E
367 371Right-handed 310
Helix 89
89
E
373 388Right-handed alpha
Helix 90
90
E
391 404Right-handed alpha
Helix 91
91
E
411 417Right-handed alpha
Helix 92
92
F
2 8Right-handed alpha
Helix 93
93
F
10 21Right-handed alpha
Helix 94
94
F
30 42Right-handed alpha
Helix 95
95
F
67 71Right-handed 310
Helix 96
96
F
82 90Right-handed alpha
Helix 97
97
F
155 166Right-handed alpha
Helix 98
98
F
183 199Right-handed alpha
Helix 99
99
F
212 221Right-handed alpha
Helix 100
100
F
235 255Right-handed alpha
Helix 101
101
F
266 278Right-handed alpha
Helix 102
102
F
290 302Right-handed alpha
Helix 103
103
F
325 336Right-handed alpha
Helix 104
104
F
346 352Right-handed alpha
Helix 105
105
F
367 371Right-handed 310
Helix 106
106
F
373 386Right-handed alpha
Helix 107
107
F
391 404Right-handed alpha
Helix 108
108
F
407 417Right-handed alpha
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There are 23 sheets in PDB entry 1PV4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 57first strand
Strand 2
A
63 66anti-parallel
Strand 3
A
79 81anti-parallel
Strand 4
A
111 119parallel
Strand 5
A
96 102anti-parallel
Strand 6
A
50 57anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 230first strand
Strand 2
A
203 209parallel
Strand 3
A
259 264parallel
Strand 4
A
312 320parallel
Strand 5
A
305 306anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 230first strand
Strand 2
A
203 209parallel
Strand 3
A
259 264parallel
Strand 4
A
312 320parallel
Strand 5
A
173 178parallel
Strand 6
A
341 344parallel
Strand 7
A
364 365anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
289 290anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 57first strand
Strand 2
B
63 66anti-parallel
Strand 3
B
79 81anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 102first strand
Strand 2
B
112 119anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
168 169anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 231first strand
Strand 2
B
203 211parallel
Strand 3
B
259 265parallel
Strand 4
B
312 320parallel
Strand 5
B
305 306anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 231first strand
Strand 2
B
203 211parallel
Strand 3
B
259 265parallel
Strand 4
B
312 320parallel
Strand 5
B
173 178parallel
Strand 6
B
341 344parallel
Strand 7
B
364 365anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 57first strand
Strand 2
C
63 66anti-parallel
Strand 3
C
79 81anti-parallel
Strand 4
C
112 119parallel
Strand 5
C
96 102anti-parallel
Strand 6
C
50 57anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
226 231first strand
Strand 2
C
203 211parallel
Strand 3
C
259 265parallel
Strand 4
C
312 320parallel
Strand 5
C
305 306anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
226 231first strand
Strand 2
C
203 211parallel
Strand 3
C
259 265parallel
Strand 4
C
312 320parallel
Strand 5
C
173 178parallel
Strand 6
C
341 344parallel
Strand 7
C
364 365anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 57first strand
Strand 2
D
63 66anti-parallel
Strand 3
D
79 81anti-parallel
Strand 4
D
112 119parallel
Strand 5
D
96 102anti-parallel
Strand 6
D
50 57anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
226 231first strand
Strand 2
D
203 211parallel
Strand 3
D
259 265parallel
Strand 4
D
312 320parallel
Strand 5
D
305 306anti-parallel
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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
226 231first strand
Strand 2
D
203 211parallel
Strand 3
D
259 265parallel
Strand 4
D
312 320parallel
Strand 5
D
173 178parallel
Strand 6
D
341 344parallel
Strand 7
D
364 365anti-parallel
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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
50 57first strand
Strand 2
E
63 66anti-parallel
Strand 3
E
79 81anti-parallel
Strand 4
E
112 119parallel
Strand 5
E
96 102anti-parallel
Strand 6
E
50 57anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
144 145first strand
Strand 2
E
168 169anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
226 231first strand
Strand 2
E
203 211parallel
Strand 3
E
259 265parallel
Strand 4
E
312 320parallel
Strand 5
E
305 306anti-parallel
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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
226 231first strand
Strand 2
E
203 211parallel
Strand 3
E
259 265parallel
Strand 4
E
312 320parallel
Strand 5
E
173 178parallel
Strand 6
E
341 344parallel
Strand 7
E
364 365anti-parallel
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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
50 57first strand
Strand 2
F
63 66anti-parallel
Strand 3
F
79 81anti-parallel
Strand 4
F
112 119parallel
Strand 5
F
96 102anti-parallel
Strand 6
F
50 57anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
144 145first strand
Strand 2
F
168 169anti-parallel
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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
226 231first strand
Strand 2
F
203 211parallel
Strand 3
F
259 265parallel
Strand 4
F
312 320parallel
Strand 5
F
305 306anti-parallel
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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
226 231first strand
Strand 2
F
203 211parallel
Strand 3
F
259 265parallel
Strand 4
F
312 320parallel
Strand 5
F
173 178parallel
Strand 6
F
341 344parallel
Strand 7
F
364 365anti-parallel
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