Analysis of interatomic Contacts of Structural Units in PDB entry:
1PV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PV5 entry

There is 1 chain in PDB entry 1PV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1SER 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1PV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed 310
Helix 2
2
A
11 19Right-handed alpha
Helix 3
3
A
69 71Right-handed 310
Helix 4
4
A
118 122Right-handed 310
Helix 5
5
A
159 165Right-handed alpha
Helix 6
6
A
167 174Right-handed alpha
Helix 7
7
A
175 177Right-handed 310
Helix 8
8
A
178 189Right-handed alpha
Helix 9
9
A
224 228Right-handed 310
Helix 10
10
A
242 248Right-handed alpha
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There are 2 sheets in PDB entry 1PV5. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 112first strand
Strand 2
A
82 87anti-parallel
Strand 3
A
61 67anti-parallel
Strand 4
A
38 39anti-parallel
Strand 5
A
142 151anti-parallel
Strand 6
A
20 29anti-parallel
Strand 7
A
194 196anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 222first strand
Strand 2
A
236 241anti-parallel
Strand 3
A
255 259anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il