Analysis of interatomic Contacts of Structural Units in PDB entry:
1PV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PV8 entry

There are 2 chains in PDB entry 1PV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 11GLU 330
B
 PRO 3LYS 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1PV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 21Right-handed alpha
Helix 2
2
A
27 29Right-handed 310
Helix 3
3
A
57 72Right-handed alpha
Helix 4
4
A
99 112Right-handed alpha
Helix 5
5
A
140 161Right-handed alpha
Helix 6
6
A
173 185Right-handed alpha
Helix 7
7
A
202 204Right-handed 310
Helix 8
8
A
205 211Right-handed alpha
Helix 9
9
A
230 244Right-handed alpha
Helix 10
10
A
254 256Right-handed 310
Helix 11
11
A
257 268Right-handed alpha
Helix 12
12
A
278 291Right-handed alpha
Helix 13
13
A
295 311Right-handed alpha
Helix 14
14
A
319 327Right-handed alpha
Helix 15
15
B
13 22Right-handed alpha
Helix 16
16
B
27 29Right-handed 310
Helix 17
17
B
60 71Right-handed alpha
Helix 18
18
B
99 112Right-handed alpha
Helix 19
19
B
140 160Right-handed alpha
Helix 20
20
B
173 185Right-handed alpha
Helix 21
21
B
202 206Right-handed 310
Helix 22
22
B
208 212Right-handed 310
Helix 23
23
B
230 244Right-handed alpha
Helix 24
24
B
254 256Right-handed 310
Helix 25
25
B
257 268Right-handed alpha
Helix 26
26
B
278 291Right-handed alpha
Helix 27
27
B
295 311Right-handed alpha
Helix 28
28
B
319 327Right-handed alpha
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There are 4 sheets in PDB entry 1PV8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
164 167parallel
Strand 3
A
116 121parallel
Strand 4
A
75 80parallel
Strand 5
A
31 37parallel
Strand 6
A
314 317parallel
Strand 7
A
273 277parallel
Strand 8
A
249 252parallel
Strand 9
A
198 199parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
54 56anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 37first strand
Strand 2
B
75 80parallel
Strand 3
B
116 121parallel
Strand 4
B
164 167parallel
Strand 5
B
192 199parallel
Strand 6
B
248 252parallel
Strand 7
B
273 277parallel
Strand 8
B
314 317parallel
Strand 9
B
31 37parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
54 56anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il