Analysis of interatomic Contacts of Structural Units in PDB entry:
1PV9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PV9 entry

There are 2 chains in PDB entry 1PV9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8ARG 345
B
 ARG 4ARG 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1PV9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 15Right-handed alpha
Helix 2
2
A
28 33Right-handed alpha
Helix 3
3
A
57 65Right-handed alpha
Helix 4
4
A
76 82Right-handed alpha
Helix 5
5
A
95 105Right-handed alpha
Helix 6
6
A
114 123Right-handed alpha
Helix 7
7
A
126 151Right-handed alpha
Helix 8
8
A
156 171Right-handed alpha
Helix 9
9
A
186 190Right-handed 310
Helix 10
10
A
231 252Right-handed alpha
Helix 11
11
A
257 272Right-handed alpha
Helix 12
12
A
274 278Right-handed 310
Helix 13
13
B
4 15Right-handed alpha
Helix 14
14
B
28 33Right-handed alpha
Helix 15
15
B
57 63Right-handed alpha
Helix 16
16
B
74 76Right-handed 310
Helix 17
17
B
77 82Right-handed alpha
Helix 18
18
B
95 106Right-handed alpha
Helix 19
19
B
114 123Right-handed alpha
Helix 20
20
B
126 151Right-handed alpha
Helix 21
21
B
156 171Right-handed alpha
Helix 22
22
B
184 190Right-handed 310
Helix 23
23
B
244 252Right-handed alpha
Helix 24
24
B
257 273Right-handed alpha
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There are 12 sheets in PDB entry 1PV9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
48 54parallel
Strand 3
A
41 45anti-parallel
Strand 4
A
19 22anti-parallel
Strand 5
A
87 90parallel
Strand 6
A
110 113parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
212 214anti-parallel
Strand 3
A
217 218anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
205 210anti-parallel
Strand 3
A
221 226anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
292 296anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 312first strand
Strand 2
A
328 332anti-parallel
Strand 3
A
337 339anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 318first strand
Strand 2
A
322 325anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
48 54parallel
Strand 3
B
41 45anti-parallel
Strand 4
B
19 22anti-parallel
Strand 5
B
87 90parallel
Strand 6
B
110 113parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
212 214anti-parallel
Strand 3
B
217 218anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
206 210anti-parallel
Strand 3
B
221 225anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
292 296anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 312first strand
Strand 2
B
328 333anti-parallel
Strand 3
B
336 339anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
324 325anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il