Analysis of interatomic Contacts of Structural Units in PDB entry:
1PVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PVD entry

There are 2 chains in PDB entry 1PVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2THR 556
B
 SER 2THR 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 1PVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1
A
6 16Right-handed alpha
Helix 2
H2
A
31 39Right-handed alpha
Helix 3
H3
A
51 65Right-handed alpha
Helix 4
H4
A
76 91Right-handed alpha
Helix 5
H5
A
124 132Right-handed alpha
Helix 6
H6
A
145 159Right-handed alpha
Helix 7
H7
A
170 173Right-handed 310
Helix 8
H8
A
178 182Right-handed 310
Helix 9
H9
A
194 210Right-handed alpha
Helix 10
A10
A
220 222Right-handed 310
Helix 11
A11
A
228 238Right-handed alpha
Helix 12
A12
A
246 248Right-handed 310
Helix 13
A13
A
270 277Right-handed alpha
Helix 14
A14
A
326 340Right-handed alpha
Helix 15
A15
A
367 374Right-handed alpha
Helix 16
A16
A
390 397Right-handed alpha
Helix 17
A17
A
417 432Right-handed alpha
Helix 18
A18
A
444 460Right-handed alpha
Helix 19
A19
A
475 478Right-handed alpha
Helix 20
A20
A
486 488Right-handed 310
Helix 21
A21
A
497 501Right-handed alpha
Helix 22
A22
A
515 522Right-handed alpha
Helix 23
A23
A
547 551Right-handed alpha
Helix 24
B1
B
6 16Right-handed alpha
Helix 25
B2
B
31 39Right-handed alpha
Helix 26
B3
B
51 65Right-handed alpha
Helix 27
B4
B
76 91Right-handed alpha
Helix 28
B5
B
124 132Right-handed alpha
Helix 29
B6
B
145 159Right-handed alpha
Helix 30
B7
B
170 173Right-handed 310
Helix 31
B8
B
178 182Right-handed 310
Helix 32
B9
B
194 210Right-handed alpha
Helix 33
B10
B
220 222Right-handed 310
Helix 34
B11
B
228 238Right-handed alpha
Helix 35
B12
B
246 248Right-handed 310
Helix 36
B13
B
270 277Right-handed alpha
Helix 37
B14
B
326 340Right-handed alpha
Helix 38
B15
B
367 374Right-handed alpha
Helix 39
B16
B
390 397Right-handed alpha
Helix 40
B17
B
417 432Right-handed alpha
Helix 41
B18
B
444 460Right-handed alpha
Helix 42
B19
B
475 478Right-handed alpha
Helix 43
B20
B
486 488Right-handed 310
Helix 44
B21
B
497 501Right-handed alpha
Helix 45
B22
B
515 522Right-handed alpha
Helix 46
B23
B
547 551Right-handed alpha
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There are 6 sheets in PDB entry 1PVD. Click on sheet of interest to get list of strands forming it: AS1, AS2, AS3, BS1, BS2, BS3,

There are 6 strands in AS1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
20 24parallel
Strand 3
A
68 73parallel
Strand 4
A
95 101parallel
Strand 5
A
163 168parallel
Strand 6
A
135 138parallel
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There are 7 strands in AS2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
242 244parallel
Strand 3
A
214 218parallel
Strand 4
A
281 285parallel
Strand 5
A
305 310parallel
Strand 6
A
313 316anti-parallel
Strand 7
A
319 322anti-parallel
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There are 6 strands in AS3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 408first strand
Strand 2
A
383 387parallel
Strand 3
A
438 443parallel
Strand 4
A
465 470parallel
Strand 5
A
534 539parallel
Strand 6
A
509 512parallel
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There are 6 strands in BS1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
20 24parallel
Strand 3
B
68 73parallel
Strand 4
B
95 101parallel
Strand 5
B
163 168parallel
Strand 6
B
135 138parallel
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There are 7 strands in BS2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 262first strand
Strand 2
B
242 244parallel
Strand 3
B
214 218parallel
Strand 4
B
281 285parallel
Strand 5
B
305 310parallel
Strand 6
B
313 316anti-parallel
Strand 7
B
319 322anti-parallel
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There are 6 strands in BS3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 408first strand
Strand 2
B
383 387parallel
Strand 3
B
438 443parallel
Strand 4
B
465 470parallel
Strand 5
B
534 539parallel
Strand 6
B
509 512parallel
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