Analysis of interatomic Contacts of Structural Units in PDB entry:
1PVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PVH entry

There are 4 chains in PDB entry 1PVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 101GLU 301
B
 CYS 12PHE 180
C
 GLY 101GLU 301
D
 CYS 12PHE 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1PVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
193 196Right-handed 310
Helix 2
2
A
225 230Right-handed 310
Helix 3
3
A
251 256Right-handed 310
Helix 4
4
B
21 49Right-handed alpha
Helix 5
5
B
55 60Right-handed alpha
Helix 6
6
B
75 105Right-handed alpha
Helix 7
7
B
108 136Right-handed alpha
Helix 8
8
B
154 178Right-handed alpha
Helix 9
9
C
193 196Right-handed 310
Helix 10
10
C
225 230Right-handed 310
Helix 11
11
C
251 256Right-handed 310
Helix 12
12
D
21 49Right-handed alpha
Helix 13
13
D
55 60Right-handed alpha
Helix 14
14
D
75 105Right-handed alpha
Helix 15
15
D
108 136Right-handed alpha
Helix 16
16
D
154 179Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 1PVH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
121 125anti-parallel
Strand 3
A
108 115anti-parallel
Strand 4
A
198 199parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
135 141anti-parallel
Strand 3
A
172 180anti-parallel
Strand 4
A
183 186anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
135 141anti-parallel
Strand 3
A
172 180anti-parallel
Strand 4
A
190 192anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 209first strand
Strand 2
A
217 223anti-parallel
Strand 3
A
261 265anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
233 241anti-parallel
Strand 3
A
272 281anti-parallel
Strand 4
A
295 298anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 161first strand
Strand 2
C
121 125anti-parallel
Strand 3
C
108 115anti-parallel
Strand 4
C
198 199parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 146first strand
Strand 2
C
135 142anti-parallel
Strand 3
C
172 180anti-parallel
Strand 4
C
183 186anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 151first strand
Strand 2
C
135 142anti-parallel
Strand 3
C
172 180anti-parallel
Strand 4
C
190 192anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 209first strand
Strand 2
C
217 223anti-parallel
Strand 3
C
261 265anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
248 249first strand
Strand 2
C
233 241anti-parallel
Strand 3
C
272 281anti-parallel
Strand 4
C
295 298anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il