Analysis of interatomic Contacts of Structural Units in PDB entry:
1PVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PVJ entry

There are 4 chains in PDB entry 1PVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 31PRO 398
B
 PHE 31PRO 398
C
 PHE 31PRO 398
D
 PHE 31PRO 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 1PVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 48Right-handed alpha
Helix 2
2
A
114 129Right-handed alpha
Helix 3
3
A
130 134Right-handed 310
Helix 4
4
A
153 157Right-handed 310
Helix 5
5
A
165 170Right-handed 310
Helix 6
6
A
191 205Right-handed alpha
Helix 7
7
A
234 238Right-handed 310
Helix 8
8
A
254 272Right-handed alpha
Helix 9
9
A
284 295Right-handed alpha
Helix 10
10
A
308 310Right-handed 310
Helix 11
11
A
311 325Right-handed alpha
Helix 12
12
B
34 48Right-handed alpha
Helix 13
13
B
114 132Right-handed alpha
Helix 14
14
B
153 157Right-handed 310
Helix 15
15
B
165 170Right-handed 310
Helix 16
16
B
191 204Right-handed alpha
Helix 17
17
B
234 238Right-handed 310
Helix 18
18
B
254 272Right-handed alpha
Helix 19
19
B
284 295Right-handed alpha
Helix 20
20
B
308 310Right-handed 310
Helix 21
21
B
311 325Right-handed alpha
Helix 22
22
C
34 48Right-handed alpha
Helix 23
23
C
114 129Right-handed alpha
Helix 24
24
C
130 134Right-handed 310
Helix 25
25
C
153 157Right-handed 310
Helix 26
26
C
165 170Right-handed 310
Helix 27
27
C
191 205Right-handed alpha
Helix 28
28
C
234 238Right-handed 310
Helix 29
29
C
254 272Right-handed alpha
Helix 30
30
C
284 295Right-handed alpha
Helix 31
31
C
308 310Right-handed 310
Helix 32
32
C
311 325Right-handed alpha
Helix 33
33
D
34 48Right-handed alpha
Helix 34
34
D
114 129Right-handed alpha
Helix 35
35
D
130 134Right-handed 310
Helix 36
36
D
153 157Right-handed 310
Helix 37
37
D
165 170Right-handed 310
Helix 38
38
D
191 205Right-handed alpha
Helix 39
39
D
234 238Right-handed 310
Helix 40
40
D
254 272Right-handed alpha
Helix 41
41
D
284 295Right-handed alpha
Helix 42
42
D
308 310Right-handed 310
Helix 43
43
D
311 325Right-handed alpha
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There are 12 sheets in PDB entry 1PVJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
88 92anti-parallel
Strand 4
A
100 104anti-parallel
Strand 5
A
365 367anti-parallel
Strand 6
A
353 356anti-parallel
Strand 7
A
342 347anti-parallel
Strand 8
A
329 332anti-parallel
Strand 9
A
391 394anti-parallel
Strand 10
A
303 306anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
230 233anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 335first strand
Strand 2
A
338 339anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 66first strand
Strand 2
B
78 83anti-parallel
Strand 3
B
88 92anti-parallel
Strand 4
B
100 104anti-parallel
Strand 5
B
365 367anti-parallel
Strand 6
B
353 356anti-parallel
Strand 7
B
342 347anti-parallel
Strand 8
B
329 332anti-parallel
Strand 9
B
391 394anti-parallel
Strand 10
B
303 306anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 217first strand
Strand 2
B
230 233anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 335first strand
Strand 2
B
338 339anti-parallel
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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 66first strand
Strand 2
C
78 83anti-parallel
Strand 3
C
88 92anti-parallel
Strand 4
C
100 104anti-parallel
Strand 5
C
365 367anti-parallel
Strand 6
C
353 356anti-parallel
Strand 7
C
342 347anti-parallel
Strand 8
C
329 332anti-parallel
Strand 9
C
391 394anti-parallel
Strand 10
C
303 306anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
214 217first strand
Strand 2
C
230 233anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
334 335first strand
Strand 2
C
338 339anti-parallel
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There are 10 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 66first strand
Strand 2
D
78 83anti-parallel
Strand 3
D
88 92anti-parallel
Strand 4
D
100 104anti-parallel
Strand 5
D
365 367anti-parallel
Strand 6
D
353 356anti-parallel
Strand 7
D
342 347anti-parallel
Strand 8
D
329 332anti-parallel
Strand 9
D
391 394anti-parallel
Strand 10
D
303 306anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
214 217first strand
Strand 2
D
230 233anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
334 335first strand
Strand 2
D
338 339anti-parallel
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