Analysis of interatomic Contacts of Structural Units in PDB entry:
1PVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PVV entry

There is 1 chain in PDB entry 1PVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1LYS 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1PVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
16 37Right-handed alpha
Helix 3
3
A
57 70Right-handed alpha
Helix 4
4
A
80 82Right-handed 310
Helix 5
5
A
89 98Right-handed alpha
Helix 6
6
A
110 121Right-handed alpha
Helix 7
7
A
134 150Right-handed alpha
Helix 8
8
A
164 177Right-handed alpha
Helix 9
9
A
192 207Right-handed alpha
Helix 10
10
A
215 220Right-handed alpha
Helix 11
11
A
241 248Right-handed alpha
Helix 12
12
A
249 251Right-handed 310
Helix 13
13
A
253 259Right-handed alpha
Helix 14
14
A
279 284Right-handed alpha
Helix 15
15
A
289 311Right-handed alpha
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There are 2 sheets in PDB entry 1PVV. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
47 52parallel
Strand 3
A
103 107parallel
Strand 4
A
125 129parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 213first strand
Strand 2
A
180 184parallel
Strand 3
A
156 160parallel
Strand 4
A
225 228parallel
Strand 5
A
265 268parallel
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