Analysis of interatomic Contacts of Structural Units in PDB entry:
1PVW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PVW entry

There are 3 chains in PDB entry 1PVW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2TYR 220
B
 ASN 2TYR 220
C
 ASN 2TYR 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 1PVW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 13Right-handed alpha
Helix 2
2
A
36 38Right-handed 310
Helix 3
3
A
39 50Right-handed alpha
Helix 4
4
A
59 67Right-handed alpha
Helix 5
5
A
70 79Right-handed alpha
Helix 6
6
A
80 81Right-handed 310
Helix 7
7
A
82 82Right-handed 310
Helix 8
8
A
83 88Right-handed alpha
Helix 9
9
A
115 132Right-handed alpha
Helix 10
10
A
134 136Right-handed 310
Helix 11
11
A
137 141Right-handed alpha
Helix 12
12
A
156 160Right-handed 310
Helix 13
13
A
163 175Right-handed alpha
Helix 14
14
A
195 205Right-handed alpha
Helix 15
15
A
213 220Right-handed alpha
Helix 16
16
B
2 13Right-handed alpha
Helix 17
17
B
36 38Right-handed 310
Helix 18
18
B
39 50Right-handed alpha
Helix 19
19
B
59 67Right-handed alpha
Helix 20
20
B
70 79Right-handed alpha
Helix 21
21
B
80 81Right-handed 310
Helix 22
22
B
82 89Right-handed 310
Helix 23
23
B
115 132Right-handed alpha
Helix 24
24
B
134 136Right-handed 310
Helix 25
25
B
137 141Right-handed alpha
Helix 26
26
B
156 160Right-handed 310
Helix 27
27
B
163 175Right-handed alpha
Helix 28
28
B
195 206Right-handed alpha
Helix 29
29
B
213 220Right-handed alpha
Helix 30
30
C
2 13Right-handed alpha
Helix 31
31
C
36 38Right-handed 310
Helix 32
32
C
39 50Right-handed alpha
Helix 33
33
C
59 67Right-handed alpha
Helix 34
34
C
70 79Right-handed alpha
Helix 35
35
C
80 81Right-handed 310
Helix 36
36
C
82 82Right-handed 310
Helix 37
37
C
83 88Right-handed alpha
Helix 38
38
C
115 132Right-handed alpha
Helix 39
39
C
134 136Right-handed 310
Helix 40
40
C
137 141Right-handed alpha
Helix 41
41
C
156 160Right-handed 310
Helix 42
42
C
163 175Right-handed alpha
Helix 43
43
C
195 206Right-handed alpha
Helix 44
44
C
213 220Right-handed alpha
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There are 3 sheets in PDB entry 1PVW. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 107first strand
Strand 2
A
142 152anti-parallel
Strand 3
A
55 58parallel
Strand 4
A
180 185anti-parallel
Strand 5
A
29 34anti-parallel
Strand 6
A
17 20anti-parallel
Strand 7
A
209 212parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 107first strand
Strand 2
B
142 152anti-parallel
Strand 3
B
55 58parallel
Strand 4
B
180 185anti-parallel
Strand 5
B
29 34anti-parallel
Strand 6
B
17 20anti-parallel
Strand 7
B
210 212parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 107first strand
Strand 2
C
142 152anti-parallel
Strand 3
C
55 58parallel
Strand 4
C
180 185anti-parallel
Strand 5
C
29 34anti-parallel
Strand 6
C
17 20anti-parallel
Strand 7
C
210 212parallel
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