Analysis of interatomic Contacts of Structural Units in PDB entry:
1PYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PYM entry

There are 2 chains in PDB entry 1PYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5ASN 295
B
 VAL 5PRO 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1PYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 16Right-handed alpha
Helix 2
2
A
29 37Right-handed alpha
Helix 3
3
A
47 54Right-handed alpha
Helix 4
4
A
64 77Right-handed alpha
Helix 5
5
A
93 106Right-handed alpha
Helix 6
6
A
135 147Right-handed alpha
Helix 7
7
A
169 181Right-handed alpha
Helix 8
8
A
197 205Right-handed alpha
Helix 9
9
A
224 228Right-handed alpha
Helix 10
10
A
240 259Right-handed alpha
Helix 11
11
A
263 266Right-handed alpha
Helix 12
12
A
272 278Right-handed alpha
Helix 13
13
A
281 291Right-handed alpha
Helix 14
14
B
7 16Right-handed alpha
Helix 15
15
B
29 38Right-handed alpha
Helix 16
16
B
47 54Right-handed alpha
Helix 17
17
B
64 77Right-handed alpha
Helix 18
18
B
93 106Right-handed alpha
Helix 19
19
B
135 148Right-handed alpha
Helix 20
20
B
169 181Right-handed alpha
Helix 21
21
B
197 205Right-handed alpha
Helix 22
22
B
224 228Right-handed alpha
Helix 23
23
B
240 259Right-handed alpha
Helix 24
24
B
263 266Right-handed alpha
Helix 25
25
B
272 278Right-handed alpha
Helix 26
26
B
281 291Right-handed alpha
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There are 2 sheets in PDB entry 1PYM. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
81 85parallel
Strand 3
A
110 114parallel
Strand 4
A
155 159parallel
Strand 5
A
186 188parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
81 85parallel
Strand 3
B
110 114parallel
Strand 4
B
155 159parallel
Strand 5
B
186 188parallel
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