Analysis of interatomic Contacts of Structural Units in PDB entry:
1PZ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PZ0 entry

There is 1 chain in PDB entry 1PZ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLY 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 1PZ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 47Right-handed alpha
Helix 2
2
A
57 60Right-handed 310
Helix 3
3
A
61 72Right-handed alpha
Helix 4
4
A
73 74Right-handed 310
Helix 5
5
A
75 79Right-handed 310
Helix 6
6
A
99 115Right-handed alpha
Helix 7
7
A
132 146Right-handed alpha
Helix 8
8
A
158 166Right-handed alpha
Helix 9
9
A
184 189Right-handed alpha
Helix 10
10
A
189 196Right-handed alpha
Helix 11
11
A
209 213Right-handed 310
Helix 12
12
A
225 230Right-handed 310
Helix 13
13
A
234 246Right-handed alpha
Helix 14
14
A
248 255Right-handed alpha
Helix 15
15
A
258 270Right-handed alpha
Helix 16
16
A
282 290Right-handed alpha
Helix 17
17
A
291 295Right-handed 310
Helix 18
18
A
298 309Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1PZ0. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
12 13anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
51 53parallel
Strand 3
A
80 85parallel
Strand 4
A
121 124parallel
Strand 5
A
152 155parallel
Strand 6
A
173 177parallel
Strand 7
A
199 203parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
94 96anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il