Analysis of interatomic Contacts of Structural Units in PDB entry:
1PZ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PZ8 entry

There are 4 chains in PDB entry 1PZ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 13CYS 198
B
 ASP 11CYS 198
C
 ALA 12CYS 198
D
 ALA 12CYS 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 1PZ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
162 167Right-handed 310
Helix 2
2
B
162 167Right-handed 310
Helix 3
3
C
162 167Right-handed 310
Helix 4
4
D
156 161Right-handed alpha
Helix 5
5
D
162 167Right-handed 310
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There are 16 sheets in PDB entry 1PZ8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
170 178anti-parallel
Strand 3
A
46 55anti-parallel
Strand 4
A
109 116anti-parallel
Strand 5
A
119 124anti-parallel
Strand 6
A
130 133anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
170 178anti-parallel
Strand 3
A
181 182anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
146 149anti-parallel
Strand 3
A
60 65anti-parallel
Strand 4
A
74 80anti-parallel
Strand 5
A
83 89anti-parallel
Strand 6
A
95 102anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
141 143anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
170 178anti-parallel
Strand 3
B
46 55anti-parallel
Strand 4
B
109 116anti-parallel
Strand 5
B
119 124anti-parallel
Strand 6
B
130 133anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
170 178anti-parallel
Strand 3
B
181 182anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 25first strand
Strand 2
B
147 149anti-parallel
Strand 3
B
60 65anti-parallel
Strand 4
B
74 80anti-parallel
Strand 5
B
83 89anti-parallel
Strand 6
B
95 102anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 44first strand
Strand 2
B
141 143anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 133first strand
Strand 2
C
119 124anti-parallel
Strand 3
C
109 116anti-parallel
Strand 4
C
46 55anti-parallel
Strand 5
C
170 178anti-parallel
Strand 6
C
181 182anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 133first strand
Strand 2
C
119 124anti-parallel
Strand 3
C
109 116anti-parallel
Strand 4
C
46 55anti-parallel
Strand 5
C
170 178anti-parallel
Strand 6
C
15 18anti-parallel
Strand 7
C
196 197anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 26first strand
Strand 2
C
146 149anti-parallel
Strand 3
C
59 65anti-parallel
Strand 4
C
74 80anti-parallel
Strand 5
C
83 89anti-parallel
Strand 6
C
95 102anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 44first strand
Strand 2
C
141 143anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 18first strand
Strand 2
D
170 178anti-parallel
Strand 3
D
46 55anti-parallel
Strand 4
D
109 116anti-parallel
Strand 5
D
119 124anti-parallel
Strand 6
D
130 133anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 18first strand
Strand 2
D
170 178anti-parallel
Strand 3
D
181 182anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 26first strand
Strand 2
D
146 149anti-parallel
Strand 3
D
60 65anti-parallel
Strand 4
D
74 80anti-parallel
Strand 5
D
83 89anti-parallel
Strand 6
D
94 102anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 44first strand
Strand 2
D
141 143anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il