Analysis of interatomic Contacts of Structural Units in PDB entry:
1PZF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1PZF entry

There are 4 chains in PDB entry 1PZF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 14	PRO 334
B	PRO 14	PRO 334
C	PRO 14	GLN 332
D	PRO 14	GLN 332

There are 63 helices in PDB entry 1PZF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	29	43	Right-handed alpha
Helix 2	2	A	57	73	Right-handed alpha
Helix 3	3	A	84	89	Right-handed alpha
Helix 4	4	A	103	107	Right-handed 310
Helix 5	5	A	108	111	Right-handed 310
Helix 6	6	A	112	131	Right-handed alpha
Helix 7	7	A	141	154	Right-handed alpha
Helix 8	8	A	156	158	Right-handed 310
Helix 9	9	A	164	181	Right-handed alpha
Helix 10	10	A	183	185	Right-handed 310
Helix 11	11	A	203	205	Right-handed 310
Helix 12	12	A	210	215	Right-handed alpha
Helix 13	13	A	220	242	Right-handed alpha
Helix 14	14	A	247	263	Right-handed alpha
Helix 15	15	A	278	280	Right-handed 310
Helix 16	16	A	308	332	Right-handed alpha
Helix 17	17	B	29	44	Right-handed alpha
Helix 18	18	B	57	73	Right-handed alpha
Helix 19	19	B	84	89	Right-handed alpha
Helix 20	20	B	103	107	Right-handed 310
Helix 21	21	B	109	111	Right-handed 310
Helix 22	22	B	112	131	Right-handed alpha
Helix 23	23	B	141	154	Right-handed alpha
Helix 24	24	B	156	158	Right-handed 310
Helix 25	25	B	164	181	Right-handed alpha
Helix 26	26	B	183	185	Right-handed 310
Helix 27	27	B	203	205	Right-handed 310
Helix 28	28	B	210	215	Right-handed alpha
Helix 29	29	B	220	242	Right-handed alpha
Helix 30	30	B	247	263	Right-handed alpha
Helix 31	31	B	278	280	Right-handed 310
Helix 32	32	B	308	332	Right-handed alpha
Helix 33	33	C	29	44	Right-handed alpha
Helix 34	34	C	57	73	Right-handed alpha
Helix 35	35	C	84	89	Right-handed alpha
Helix 36	36	C	103	107	Right-handed 310
Helix 37	37	C	109	111	Right-handed 310
Helix 38	38	C	112	131	Right-handed alpha
Helix 39	39	C	141	154	Right-handed alpha
Helix 40	40	C	156	158	Right-handed 310
Helix 41	41	C	164	181	Right-handed alpha
Helix 42	42	C	183	185	Right-handed 310
Helix 43	43	C	203	205	Right-handed 310
Helix 44	44	C	210	215	Right-handed alpha
Helix 45	45	C	220	242	Right-handed alpha
Helix 46	46	C	247	263	Right-handed alpha
Helix 47	47	C	278	280	Right-handed 310
Helix 48	48	C	308	332	Right-handed alpha
Helix 49	49	D	29	44	Right-handed alpha
Helix 50	50	D	57	73	Right-handed alpha
Helix 51	51	D	84	89	Right-handed alpha
Helix 52	52	D	103	107	Right-handed 310
Helix 53	53	D	109	111	Right-handed 310
Helix 54	54	D	112	131	Right-handed alpha
Helix 55	55	D	141	154	Right-handed alpha
Helix 56	56	D	164	181	Right-handed alpha
Helix 57	57	D	183	185	Right-handed 310
Helix 58	58	D	203	205	Right-handed 310
Helix 59	59	D	210	215	Right-handed alpha
Helix 60	60	D	220	242	Right-handed alpha
Helix 61	61	D	247	263	Right-handed alpha
Helix 62	62	D	278	280	Right-handed 310
Helix 63	63	D	308	332	Right-handed alpha

There are 17 sheets in PDB entry 1PZF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	47	52	parallel
Strand 3	A	22	26	parallel
Strand 4	A	93	96	parallel
Strand 5	A	134	137	parallel
Strand 6	A	160	162	parallel

Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	207	208	anti-parallel
Strand 3	A	209	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	200	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	276	first strand
Strand 2	A	282	294	anti-parallel
Strand 3	A	297	302	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	80	first strand
Strand 2	B	47	52	parallel
Strand 3	B	22	26	parallel
Strand 4	B	93	96	parallel
Strand 5	B	134	137	parallel
Strand 6	B	160	162	parallel

Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	207	208	anti-parallel
Strand 3	B	209	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	200	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	268	first strand
Strand 2	B	291	294	anti-parallel
Strand 3	B	297	302	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	276	first strand
Strand 2	B	282	289	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	81	first strand
Strand 2	C	47	52	parallel
Strand 3	C	22	26	parallel
Strand 4	C	93	96	parallel
Strand 5	C	134	137	parallel
Strand 6	C	160	162	parallel

Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	207	208	anti-parallel
Strand 3	C	209	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	200	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	276	first strand
Strand 2	C	282	294	anti-parallel
Strand 3	C	297	302	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	80	first strand
Strand 2	D	47	52	parallel
Strand 3	D	22	26	parallel
Strand 4	D	93	96	parallel
Strand 5	D	134	137	parallel
Strand 6	D	160	162	parallel

Back to list of sheets
Back to top of page

There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	207	208	anti-parallel
Strand 3	D	209	209	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	200	201	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	276	first strand
Strand 2	D	282	294	anti-parallel
Strand 3	D	297	302	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1PZF

Analysis of interatomic Contacts of Structural Units in PDB entry:
1PZF