Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q00 entry

There is 1 chain in PDB entry 1Q00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1Q00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 33Right-handed alpha
Helix 2
2
A
50 67Right-handed alpha
Helix 3
3
A
84 107Right-handed alpha
Helix 4
4
A
119 131Right-handed alpha
Helix 5
5
A
148 154Right-handed alpha
Helix 6
6
A
259 271Right-handed alpha
Helix 7
7
A
282 291Right-handed alpha
Helix 8
8
A
307 322Right-handed alpha
Helix 9
9
A
353 368Right-handed alpha
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There are 3 sheets in PDB entry 1Q00. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
47 49anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
140 147parallel
Strand 3
A
159 166anti-parallel
Strand 4
A
169 177anti-parallel
Strand 5
A
208 213anti-parallel
Strand 6
A
218 221anti-parallel
Strand 7
A
234 235anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
295 296parallel
Strand 3
A
347 350anti-parallel
Strand 4
A
324 327anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il