Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q0C entry

There are 4 chains in PDB entry 1Q0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ILE 322
B
 GLU 4ILE 322
C
 GLU 4ILE 322
D
 GLU 4ILE 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1Q0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 36Right-handed alpha
Helix 2
2
A
84 97Right-handed alpha
Helix 3
3
A
162 173Right-handed alpha
Helix 4
4
A
221 235Right-handed alpha
Helix 5
5
A
237 239Right-handed 310
Helix 6
6
A
249 252Right-handed 310
Helix 7
7
A
301 307Right-handed alpha
Helix 8
8
B
27 37Right-handed alpha
Helix 9
9
B
83 97Right-handed alpha
Helix 10
10
B
162 173Right-handed alpha
Helix 11
11
B
221 235Right-handed alpha
Helix 12
12
B
237 239Right-handed 310
Helix 13
13
B
301 307Right-handed alpha
Helix 14
14
C
27 36Right-handed alpha
Helix 15
15
C
84 97Right-handed alpha
Helix 16
16
C
162 173Right-handed alpha
Helix 17
17
C
221 235Right-handed alpha
Helix 18
18
C
237 239Right-handed 310
Helix 19
19
C
301 307Right-handed alpha
Helix 20
20
D
27 36Right-handed alpha
Helix 21
21
D
84 97Right-handed alpha
Helix 22
22
D
162 173Right-handed alpha
Helix 23
23
D
221 235Right-handed alpha
Helix 24
24
D
237 239Right-handed 310
Helix 25
25
D
249 252Right-handed 310
Helix 26
26
D
301 307Right-handed alpha
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There are 11 sheets in PDB entry 1Q0C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
64 68anti-parallel
Strand 4
A
15 25parallel
Strand 5
A
73 81anti-parallel
Strand 6
A
125 129parallel
Strand 7
A
115 119anti-parallel
Strand 8
A
100 104anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 247first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
265 270anti-parallel
Strand 4
A
211 218parallel
Strand 5
A
152 160anti-parallel
Strand 6
A
202 206parallel
Strand 7
A
188 194anti-parallel
Strand 8
A
176 182anti-parallel
Strand 9
A
283 286parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 247first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
265 270anti-parallel
Strand 4
A
211 218parallel
Strand 5
A
309 310anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
50 54anti-parallel
Strand 3
B
64 68anti-parallel
Strand 4
B
15 25parallel
Strand 5
B
73 81anti-parallel
Strand 6
B
125 129parallel
Strand 7
B
115 119anti-parallel
Strand 8
B
101 104anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 247first strand
Strand 2
B
254 259anti-parallel
Strand 3
B
265 270anti-parallel
Strand 4
B
211 218parallel
Strand 5
B
152 160anti-parallel
Strand 6
B
202 206parallel
Strand 7
B
188 194anti-parallel
Strand 8
B
176 182anti-parallel
Strand 9
B
283 286parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 247first strand
Strand 2
B
254 259anti-parallel
Strand 3
B
265 270anti-parallel
Strand 4
B
211 218parallel
Strand 5
B
309 310anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 46first strand
Strand 2
C
50 54anti-parallel
Strand 3
C
64 68anti-parallel
Strand 4
C
15 25parallel
Strand 5
C
73 81anti-parallel
Strand 6
C
125 129parallel
Strand 7
C
115 119anti-parallel
Strand 8
C
101 104anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
241 247first strand
Strand 2
C
254 259anti-parallel
Strand 3
C
265 270anti-parallel
Strand 4
C
211 218parallel
Strand 5
C
152 160anti-parallel
Strand 6
C
202 206parallel
Strand 7
C
188 194anti-parallel
Strand 8
C
176 182anti-parallel
Strand 9
C
283 286parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 46first strand
Strand 2
D
50 54anti-parallel
Strand 3
D
64 68anti-parallel
Strand 4
D
15 25parallel
Strand 5
D
73 81anti-parallel
Strand 6
D
125 129parallel
Strand 7
D
115 119anti-parallel
Strand 8
D
101 104anti-parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
241 247first strand
Strand 2
D
254 259anti-parallel
Strand 3
D
265 270anti-parallel
Strand 4
D
211 218parallel
Strand 5
D
152 160anti-parallel
Strand 6
D
202 206parallel
Strand 7
D
188 194anti-parallel
Strand 8
D
176 182anti-parallel
Strand 9
D
283 286parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
241 247first strand
Strand 2
D
254 259anti-parallel
Strand 3
D
265 270anti-parallel
Strand 4
D
211 218parallel
Strand 5
D
309 310anti-parallel
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