Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q0I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q0I entry

There is 1 chain in PDB entry 1Q0I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1Q0I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 35Right-handed alpha
Helix 2
2
A
47 61Right-handed alpha
Helix 3
3
A
95 106Right-handed alpha
Helix 4
4
A
118 123Right-handed alpha
Helix 5
5
A
126 134Right-handed alpha
Helix 6
6
A
135 137Right-handed 310
Helix 7
7
A
170 180Right-handed alpha
Helix 8
8
A
199 211Right-handed alpha
Helix 9
9
A
242 256Right-handed alpha
Helix 10
10
A
275 284Right-handed alpha
Helix 11
11
A
314 322Right-handed alpha
Helix 12
12
A
334 338Right-handed 310
Helix 13
13
A
343 356Right-handed alpha
Helix 14
14
A
389 394Right-handed 310
Helix 15
15
A
415 423Right-handed alpha
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There are 7 sheets in PDB entry 1Q0I. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
401 404anti-parallel
Strand 3
A
379 380parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 290first strand
Strand 2
A
293 297anti-parallel
Strand 3
A
257 263anti-parallel
Strand 4
A
11 17parallel
Strand 5
A
424 425anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
73 76anti-parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
236 238parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 93first strand
Strand 2
A
112 117parallel
Strand 3
A
151 153anti-parallel
Strand 4
A
140 142anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
187 190parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
223 224anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
329 332parallel
Strand 3
A
366 369anti-parallel
Strand 4
A
358 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il