Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q0L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q0L entry

There is 1 chain in PDB entry 1Q0L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1Q0L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 23Right-handed alpha
Helix 2
2
A
38 50Right-handed alpha
Helix 3
3
A
58 73Right-handed alpha
Helix 4
4
A
81 89Right-handed alpha
Helix 5
5
A
103 105Right-handed 310
Helix 6
6
A
106 116Right-handed alpha
Helix 7
7
A
124 132Right-handed alpha
Helix 8
8
A
132 142Right-handed alpha
Helix 9
9
A
150 159Right-handed alpha
Helix 10
10
A
161 166Right-handed alpha
Helix 11
11
A
173 176Right-handed 310
Helix 12
12
A
194 201Right-handed 310
Helix 13
13
A
202 207Right-handed alpha
Helix 14
14
A
215 225Right-handed alpha
Helix 15
15
A
225 239Right-handed alpha
Helix 16
16
A
242 244Right-handed 310
Helix 17
17
A
276 286Right-handed alpha
Helix 18
18
A
298 302Right-handed 310
Helix 19
19
A
315 328Right-handed alpha
Helix 20
20
A
328 348Right-handed alpha
Helix 21
21
A
354 367Right-handed alpha
Helix 22
22
A
374 395Right-handed alpha
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There are 2 sheets in PDB entry 1Q0L. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
53 56parallel
Strand 3
A
28 35parallel
Strand 4
A
2 7parallel
Strand 5
A
96 99parallel
Strand 6
A
119 122parallel
Strand 7
A
146 148parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 249first strand
Strand 2
A
178 184parallel
Strand 3
A
256 262anti-parallel
Strand 4
A
267 271anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il