Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q0P entry

There is 1 chain in PDB entry 1Q0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 243SER 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1Q0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
257 277Right-handed alpha
Helix 2
2
A
301 305Right-handed 310
Helix 3
3
A
306 316Right-handed alpha
Helix 4
4
A
329 342Right-handed alpha
Helix 5
5
A
351 355Right-handed 310
Helix 6
6
A
373 384Right-handed alpha
Helix 7
7
A
394 396Right-handed 310
Helix 8
8
A
410 418Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1Q0P.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 297first strand
Strand 2
A
283 289anti-parallel
Strand 3
A
244 251parallel
Strand 4
A
356 363parallel
Strand 5
A
398 404parallel
Strand 6
A
427 429parallel
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