Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q0Q entry

There are 2 chains in PDB entry 1Q0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 398
B
 MET 1SER 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 1Q0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
38 50Right-handed alpha
Helix 3
3
A
58 72Right-handed alpha
Helix 4
4
A
81 90Right-handed alpha
Helix 5
5
A
103 105Right-handed 310
Helix 6
6
A
106 116Right-handed alpha
Helix 7
7
A
124 132Right-handed alpha
Helix 8
8
A
132 143Right-handed alpha
Helix 9
9
A
150 159Right-handed alpha
Helix 10
10
A
161 166Right-handed alpha
Helix 11
11
A
173 176Right-handed 310
Helix 12
12
A
194 201Right-handed 310
Helix 13
13
A
202 208Right-handed alpha
Helix 14
14
A
215 224Right-handed alpha
Helix 15
15
A
225 240Right-handed alpha
Helix 16
16
A
242 244Right-handed 310
Helix 17
17
A
276 286Right-handed alpha
Helix 18
18
A
315 328Right-handed alpha
Helix 19
19
A
328 348Right-handed alpha
Helix 20
20
A
354 367Right-handed alpha
Helix 21
21
A
374 396Right-handed alpha
Helix 22
22
B
11 23Right-handed alpha
Helix 23
23
B
38 50Right-handed alpha
Helix 24
24
B
58 72Right-handed alpha
Helix 25
25
B
81 90Right-handed alpha
Helix 26
26
B
103 105Right-handed 310
Helix 27
27
B
106 116Right-handed alpha
Helix 28
28
B
124 132Right-handed alpha
Helix 29
29
B
132 142Right-handed alpha
Helix 30
30
B
150 159Right-handed alpha
Helix 31
31
B
161 166Right-handed alpha
Helix 32
32
B
173 176Right-handed 310
Helix 33
33
B
194 201Right-handed 310
Helix 34
34
B
202 208Right-handed alpha
Helix 35
35
B
215 224Right-handed alpha
Helix 36
36
B
225 240Right-handed alpha
Helix 37
37
B
242 244Right-handed 310
Helix 38
38
B
276 286Right-handed alpha
Helix 39
39
B
298 302Right-handed 310
Helix 40
40
B
315 328Right-handed alpha
Helix 41
41
B
328 348Right-handed alpha
Helix 42
42
B
354 367Right-handed alpha
Helix 43
43
B
374 396Right-handed alpha
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There are 3 sheets in PDB entry 1Q0Q. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
53 56parallel
Strand 3
A
28 35parallel
Strand 4
A
2 7parallel
Strand 5
A
96 99parallel
Strand 6
A
119 122parallel
Strand 7
A
145 148parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
178 185parallel
Strand 3
A
256 262anti-parallel
Strand 4
A
267 271anti-parallel
Strand 5
B
267 271anti-parallel
Strand 6
B
256 262anti-parallel
Strand 7
B
178 185anti-parallel
Strand 8
B
246 250parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
53 56parallel
Strand 3
B
28 35parallel
Strand 4
B
2 7parallel
Strand 5
B
96 99parallel
Strand 6
B
119 122parallel
Strand 7
B
145 148parallel
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