Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q0T entry

There are 4 chains in PDB entry 1Q0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 402 T 413
D
 A 422 T 433
A
 MET 1ASN 259
B
 MET 1ASN 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1Q0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 20Right-handed alpha
Helix 2
2
A
52 63Right-handed alpha
Helix 3
3
A
66 78Right-handed alpha
Helix 4
4
A
83 98Right-handed alpha
Helix 5
5
A
99 108Right-handed alpha
Helix 6
6
A
109 114Right-handed 310
Helix 7
7
A
133 147Right-handed alpha
Helix 8
8
A
156 160Right-handed 310
Helix 9
9
A
179 184Right-handed 310
Helix 10
10
A
186 202Right-handed alpha
Helix 11
11
A
220 229Right-handed alpha
Helix 12
12
B
14 20Right-handed alpha
Helix 13
13
B
52 63Right-handed alpha
Helix 14
14
B
66 78Right-handed alpha
Helix 15
15
B
83 98Right-handed alpha
Helix 16
16
B
99 108Right-handed alpha
Helix 17
17
B
109 114Right-handed 310
Helix 18
18
B
133 147Right-handed alpha
Helix 19
19
B
156 160Right-handed 310
Helix 20
20
B
179 184Right-handed 310
Helix 21
21
B
186 202Right-handed alpha
Helix 22
22
B
220 229Right-handed alpha
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There are 4 sheets in PDB entry 1Q0T. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
46 49parallel
Strand 3
A
27 30parallel
Strand 4
A
166 170parallel
Strand 5
A
207 211parallel
Strand 6
A
255 256anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
218 219anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
46 49parallel
Strand 3
B
27 30parallel
Strand 4
B
166 170parallel
Strand 5
B
207 211parallel
Strand 6
B
255 256anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 215first strand
Strand 2
B
218 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il