Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q35 entry

There is 1 chain in PDB entry 1Q35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLU 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 1Q35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 14Right-handed 310
Helix 2
2
A
15 27Right-handed alpha
Helix 3
3
A
39 47Right-handed alpha
Helix 4
4
A
48 50Right-handed 310
Helix 5
5
A
59 69Right-handed alpha
Helix 6
6
A
77 84Right-handed alpha
Helix 7
7
A
85 89Right-handed 310
Helix 8
8
A
120 130Right-handed 310
Helix 9
9
A
140 169Right-handed alpha
Helix 10
10
A
177 187Right-handed alpha
Helix 11
11
A
197 206Right-handed alpha
Helix 12
12
A
209 215Right-handed alpha
Helix 13
13
A
242 255Right-handed alpha
Helix 14
14
A
255 267Right-handed alpha
Helix 15
15
A
278 284Right-handed alpha
Helix 16
16
A
293 299Right-handed alpha
Helix 17
17
A
300 312Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1Q35. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
3 8parallel
Strand 3
A
54 57parallel
Strand 4
A
228 236anti-parallel
Strand 5
A
96 108anti-parallel
Strand 6
A
216 219anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
192 196parallel
Strand 3
A
96 108anti-parallel
Strand 4
A
269 270anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il