Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q5E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q5E entry

There is 1 chain in PDB entry 1Q5E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 13SER 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1Q5E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 39Right-handed alpha
Helix 2
2
A
54 63Right-handed alpha
Helix 3
3
A
76 80Right-handed 310
Helix 4
4
A
84 86Right-handed 310
Helix 5
5
A
87 93Right-handed alpha
Helix 6
6
A
99 111Right-handed alpha
Helix 7
7
A
112 114Right-handed 310
Helix 8
8
A
115 120Right-handed alpha
Helix 9
9
A
122 135Right-handed alpha
Helix 10
10
A
145 149Right-handed alpha
Helix 11
11
A
150 152Right-handed 310
Helix 12
12
A
153 163Right-handed alpha
Helix 13
13
A
168 184Right-handed alpha
Helix 14
14
A
194 219Right-handed alpha
Helix 15
15
A
224 235Right-handed alpha
Helix 16
16
A
240 255Right-handed alpha
Helix 17
17
A
256 272Right-handed alpha
Helix 18
18
A
273 283Right-handed alpha
Helix 19
19
A
286 298Right-handed alpha
Helix 20
20
A
330 334Right-handed alpha
Helix 21
21
A
367 386Right-handed alpha
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There are 2 sheets in PDB entry 1Q5E. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
49 52anti-parallel
Strand 3
A
325 329parallel
Strand 4
A
304 309anti-parallel
Strand 5
A
67 68anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
410 412anti-parallel
Strand 3
A
390 391anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il