Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q6H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q6H entry

There are 2 chains in PDB entry 1Q6H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 15LYS 224
B
 ALA 15LYS 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1Q6H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 44Right-handed alpha
Helix 2
2
A
50 63Right-handed alpha
Helix 3
3
A
69 113Right-handed alpha
Helix 4
4
A
160 163Right-handed 310
Helix 5
5
A
171 173Right-handed 310
Helix 6
6
A
174 181Right-handed alpha
Helix 7
7
A
182 184Right-handed 310
Helix 8
8
A
195 199Right-handed 310
Helix 9
9
B
18 44Right-handed alpha
Helix 10
10
B
50 63Right-handed alpha
Helix 11
11
B
69 113Right-handed alpha
Helix 12
12
B
160 163Right-handed 310
Helix 13
13
B
171 173Right-handed 310
Helix 14
14
B
174 181Right-handed alpha
Helix 15
15
B
182 184Right-handed 310
Helix 16
16
B
195 199Right-handed 310
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There are 4 sheets in PDB entry 1Q6H. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
124 129anti-parallel
Strand 3
A
189 194anti-parallel
Strand 4
A
214 224anti-parallel
Strand 5
A
141 150anti-parallel
Strand 6
A
155 158anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
124 129anti-parallel
Strand 3
A
189 194anti-parallel
Strand 4
A
214 224anti-parallel
Strand 5
A
141 150anti-parallel
Strand 6
A
166 169anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
124 129anti-parallel
Strand 3
B
189 194anti-parallel
Strand 4
B
214 224anti-parallel
Strand 5
B
141 150anti-parallel
Strand 6
B
155 158anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
124 129anti-parallel
Strand 3
B
189 194anti-parallel
Strand 4
B
214 224anti-parallel
Strand 5
B
141 150anti-parallel
Strand 6
B
166 169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il