Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q7R entry

There is 1 chain in PDB entry 1Q7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -5LYS 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1Q7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 11Right-handed 310
Helix 2
2
A
12 22Right-handed alpha
Helix 3
3
A
31 36Right-handed 310
Helix 4
4
A
47 58Right-handed alpha
Helix 5
5
A
60 70Right-handed alpha
Helix 6
6
A
79 84Right-handed alpha
Helix 7
7
A
105 110Right-handed alpha
Helix 8
8
A
169 173Right-handed 310
Helix 9
9
A
176 196Right-handed alpha
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There are 3 sheets in PDB entry 1Q7R. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
2 6parallel
Strand 3
A
40 43parallel
Strand 4
A
74 77parallel
Strand 5
A
163 166parallel
Strand 6
A
154 160anti-parallel
Strand 7
A
146 151anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 89first strand
Strand 2
A
99 104parallel
Strand 3
A
137 141anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 121first strand
Strand 2
A
125 132anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il