Analysis of interatomic Contacts of Structural Units in PDB entry:
1Q88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1Q88 entry

There are 2 chains in PDB entry 1Q88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 148ALA 339
B
 MET 148HIS 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1Q88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
154 174Right-handed alpha
Helix 2
2
A
182 194Right-handed alpha
Helix 3
3
A
199 211Right-handed alpha
Helix 4
4
A
221 231Right-handed alpha
Helix 5
5
A
233 235Right-handed 310
Helix 6
6
A
236 251Right-handed alpha
Helix 7
7
A
318 326Right-handed alpha
Helix 8
8
B
154 174Right-handed alpha
Helix 9
9
B
182 194Right-handed alpha
Helix 10
10
B
199 211Right-handed alpha
Helix 11
11
B
221 231Right-handed alpha
Helix 12
12
B
233 235Right-handed 310
Helix 13
13
B
236 250Right-handed alpha
Helix 14
14
B
258 263Right-handed 310
Helix 15
15
B
264 268Right-handed 310
Helix 16
16
B
318 326Right-handed alpha
Helix 17
17
B
328 332Right-handed 310
Helix 18
18
B
340 344Right-handed 310
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There are 4 sheets in PDB entry 1Q88. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
218 220anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
283 287anti-parallel
Strand 3
A
292 297anti-parallel
Strand 4
A
308 309anti-parallel
Strand 5
A
315 316anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 181first strand
Strand 2
B
218 220anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 276first strand
Strand 2
B
283 288anti-parallel
Strand 3
B
291 297anti-parallel
Strand 4
B
308 310anti-parallel
Strand 5
B
315 316anti-parallel
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