Analysis of interatomic Contacts of Structural Units in PDB entry:
1QE0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QE0 entry

There are 2 chains in PDB entry 1QE0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 420
B
 MET 1LYS 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1QE0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 34Right-handed alpha
Helix 2
2
A
46 50Right-handed alpha
Helix 3
3
A
68 73Right-handed alpha
Helix 4
4
A
81 92Right-handed alpha
Helix 5
5
A
93 97Right-handed 310
Helix 6
6
A
136 154Right-handed alpha
Helix 7
7
A
168 184Right-handed alpha
Helix 8
8
A
185 190Right-handed 310
Helix 9
9
A
191 197Right-handed alpha
Helix 10
10
A
201 206Right-handed 310
Helix 11
11
A
222 226Right-handed 310
Helix 12
12
A
230 246Right-handed alpha
Helix 13
13
A
291 296Right-handed alpha
Helix 14
14
A
310 320Right-handed alpha
Helix 15
15
A
337 354Right-handed alpha
Helix 16
16
A
367 378Right-handed alpha
Helix 17
17
A
387 394Right-handed alpha
Helix 18
18
A
412 420Right-handed alpha
Helix 19
19
B
12 34Right-handed alpha
Helix 20
20
B
46 51Right-handed alpha
Helix 21
21
B
68 73Right-handed alpha
Helix 22
22
B
81 92Right-handed alpha
Helix 23
23
B
93 97Right-handed 310
Helix 24
24
B
136 153Right-handed alpha
Helix 25
25
B
231 246Right-handed alpha
Helix 26
26
B
291 296Right-handed alpha
Helix 27
27
B
310 320Right-handed alpha
Helix 28
28
B
337 354Right-handed alpha
Helix 29
29
B
367 378Right-handed alpha
Helix 30
30
B
387 394Right-handed alpha
Helix 31
31
B
412 419Right-handed alpha
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There are 6 sheets in PDB entry 1QE0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 37first strand
Strand 2
A
102 111parallel
Strand 3
A
123 132anti-parallel
Strand 4
A
302 309anti-parallel
Strand 5
A
280 290anti-parallel
Strand 6
A
262 272anti-parallel
Strand 7
A
159 165anti-parallel
Strand 8
A
250 251parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
75 77anti-parallel
Strand 3
A
65 67anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
332 336parallel
Strand 3
A
382 386parallel
Strand 4
A
396 400anti-parallel
Strand 5
A
406 409anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 37first strand
Strand 2
B
102 111parallel
Strand 3
B
123 132anti-parallel
Strand 4
B
302 309anti-parallel
Strand 5
B
280 290anti-parallel
Strand 6
B
265 272anti-parallel
Strand 7
B
159 165anti-parallel
Strand 8
B
249 251parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
75 77anti-parallel
Strand 3
B
66 67anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 361first strand
Strand 2
B
332 336parallel
Strand 3
B
382 386parallel
Strand 4
B
395 400anti-parallel
Strand 5
B
406 410anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il