Analysis of interatomic Contacts of Structural Units in PDB entry:
1QF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QF5 entry

There is 1 chain in PDB entry 1QF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ALA 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1QF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 26Right-handed alpha
Helix 2
2
A
76 89Right-handed alpha
Helix 3
3
A
93 96Right-handed alpha
Helix 4
4
A
108 124Right-handed alpha
Helix 5
5
A
133 141Right-handed alpha
Helix 6
6
A
148 152Right-handed 310
Helix 7
7
A
154 173Right-handed alpha
Helix 8
8
A
183 191Right-handed alpha
Helix 9
9
A
194 200Right-handed alpha
Helix 10
10
A
204 214Right-handed alpha
Helix 11
11
A
226 228Right-handed 310
Helix 12
12
A
245 250Right-handed 310
Helix 13
13
A
256 258Right-handed 310
Helix 14
14
A
285 294Right-handed alpha
Helix 15
15
A
312 322Right-handed alpha
Helix 16
16
A
332 335Right-handed 310
Helix 17
17
A
362 364Right-handed 310
Helix 18
18
A
388 390Right-handed 310
Helix 19
19
A
393 406Right-handed alpha
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There are 5 sheets in PDB entry 1QF5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 424first strand
Strand 2
A
410 414anti-parallel
Strand 3
A
326 330parallel
Strand 4
A
261 267parallel
Strand 5
A
3 8parallel
Strand 6
A
218 221parallel
Strand 7
A
29 32parallel
Strand 8
A
65 68parallel
Strand 9
A
97 99parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
48 52anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
306 308anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 342first strand
Strand 2
A
374 376anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
369 371anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il