Analysis of interatomic Contacts of Structural Units in PDB entry:
1QF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QF7 entry

There are 4 chains in PDB entry 1QF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 27ALA 753
B
 ASP 27ALA 753
C
 ASP 27ALA 753
D
 ASP 27ALA 753
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are120 helices in PDB entry 1QF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 56Right-handed alpha
Helix 2
2
A
63 71Right-handed alpha
Helix 3
3
A
108 119Right-handed alpha
Helix 4
4
A
151 153Right-handed 310
Helix 5
5
A
211 221Right-handed 310
Helix 6
6
A
237 245Right-handed alpha
Helix 7
7
A
247 257Right-handed 310
Helix 8
8
A
259 261Right-handed 310
Helix 9
9
A
266 268Right-handed 310
Helix 10
10
A
304 313Right-handed alpha
Helix 11
11
A
317 327Right-handed alpha
Helix 12
12
A
343 345Right-handed 310
Helix 13
13
A
382 385Right-handed alpha
Helix 14
14
A
406 422Right-handed alpha
Helix 15
15
A
428 430Right-handed 310
Helix 16
16
A
432 434Right-handed 310
Helix 17
17
A
499 501Right-handed 310
Helix 18
18
A
506 514Right-handed alpha
Helix 19
19
A
517 533Right-handed alpha
Helix 20
20
A
537 549Right-handed alpha
Helix 21
21
A
552 562Right-handed alpha
Helix 22
22
A
568 572Right-handed alpha
Helix 23
23
A
586 588Right-handed 310
Helix 24
24
A
613 626Right-handed alpha
Helix 25
25
A
659 661Right-handed 310
Helix 26
26
A
672 676Right-handed 310
Helix 27
27
A
679 690Right-handed alpha
Helix 28
28
A
699 706Right-handed 310
Helix 29
29
A
727 738Right-handed alpha
Helix 30
30
A
742 750Right-handed 310
Helix 31
31
B
53 56Right-handed alpha
Helix 32
32
B
63 71Right-handed alpha
Helix 33
33
B
108 118Right-handed alpha
Helix 34
34
B
151 153Right-handed 310
Helix 35
35
B
211 221Right-handed 310
Helix 36
36
B
237 245Right-handed alpha
Helix 37
37
B
247 257Right-handed 310
Helix 38
38
B
259 262Right-handed 310
Helix 39
39
B
266 268Right-handed 310
Helix 40
40
B
304 313Right-handed alpha
Helix 41
41
B
317 328Right-handed alpha
Helix 42
42
B
343 345Right-handed 310
Helix 43
43
B
382 385Right-handed alpha
Helix 44
44
B
406 422Right-handed alpha
Helix 45
45
B
428 430Right-handed 310
Helix 46
46
B
432 434Right-handed 310
Helix 47
47
B
499 501Right-handed 310
Helix 48
48
B
506 514Right-handed alpha
Helix 49
49
B
517 533Right-handed alpha
Helix 50
50
B
537 549Right-handed alpha
Helix 51
51
B
552 562Right-handed alpha
Helix 52
52
B
568 572Right-handed alpha
Helix 53
53
B
586 588Right-handed 310
Helix 54
54
B
613 626Right-handed alpha
Helix 55
55
B
659 661Right-handed 310
Helix 56
56
B
672 676Right-handed 310
Helix 57
57
B
679 690Right-handed alpha
Helix 58
58
B
699 706Right-handed 310
Helix 59
59
B
727 738Right-handed alpha
Helix 60
60
B
742 750Right-handed 310
Helix 61
61
C
53 56Right-handed alpha
Helix 62
62
C
63 71Right-handed alpha
Helix 63
63
C
108 119Right-handed alpha
Helix 64
64
C
151 153Right-handed 310
Helix 65
65
C
211 221Right-handed 310
Helix 66
66
C
237 245Right-handed alpha
Helix 67
67
C
247 257Right-handed 310
Helix 68
68
C
259 262Right-handed 310
Helix 69
69
C
266 268Right-handed 310
Helix 70
70
C
304 313Right-handed alpha
Helix 71
71
C
317 328Right-handed alpha
Helix 72
72
C
343 345Right-handed 310
Helix 73
73
C
382 385Right-handed alpha
Helix 74
74
C
406 422Right-handed alpha
Helix 75
75
C
428 430Right-handed 310
Helix 76
76
C
432 434Right-handed 310
Helix 77
77
C
499 501Right-handed 310
Helix 78
78
C
506 513Right-handed alpha
Helix 79
79
C
517 533Right-handed alpha
Helix 80
80
C
537 549Right-handed alpha
Helix 81
81
C
552 562Right-handed alpha
Helix 82
82
C
568 571Right-handed alpha
Helix 83
83
C
586 588Right-handed 310
Helix 84
84
C
613 626Right-handed alpha
Helix 85
85
C
659 661Right-handed 310
Helix 86
86
C
672 674Right-handed 310
Helix 87
87
C
679 690Right-handed alpha
Helix 88
88
C
699 706Right-handed 310
Helix 89
89
C
727 738Right-handed alpha
Helix 90
90
C
742 750Right-handed 310
Helix 91
91
D
53 56Right-handed alpha
Helix 92
92
D
63 71Right-handed alpha
Helix 93
93
D
108 119Right-handed alpha
Helix 94
94
D
151 153Right-handed 310
Helix 95
95
D
211 221Right-handed 310
Helix 96
96
D
237 245Right-handed alpha
Helix 97
97
D
247 257Right-handed 310
Helix 98
98
D
259 262Right-handed 310
Helix 99
99
D
266 268Right-handed 310
Helix 100
100
D
304 313Right-handed alpha
Helix 101
101
D
317 328Right-handed alpha
Helix 102
102
D
343 345Right-handed 310
Helix 103
103
D
382 385Right-handed alpha
Helix 104
104
D
406 422Right-handed alpha
Helix 105
105
D
428 430Right-handed 310
Helix 106
106
D
432 434Right-handed 310
Helix 107
107
D
499 501Right-handed 310
Helix 108
108
D
506 514Right-handed alpha
Helix 109
109
D
517 533Right-handed alpha
Helix 110
110
D
537 549Right-handed alpha
Helix 111
111
D
552 561Right-handed alpha
Helix 112
112
D
568 571Right-handed alpha
Helix 113
113
D
586 588Right-handed 310
Helix 114
114
D
613 626Right-handed alpha
Helix 115
115
D
659 661Right-handed 310
Helix 116
116
D
672 674Right-handed 310
Helix 117
117
D
679 690Right-handed alpha
Helix 118
118
D
699 706Right-handed 310
Helix 119
119
D
727 737Right-handed alpha
Helix 120
120
D
742 748Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 1QF7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 201first strand
Strand 2
A
184 191anti-parallel
Strand 3
A
160 167anti-parallel
Strand 4
A
131 140anti-parallel
Strand 5
A
367 377anti-parallel
Strand 6
A
333 342anti-parallel
Strand 7
A
286 295anti-parallel
Strand 8
A
277 280anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 633first strand
Strand 2
A
602 606parallel
Strand 3
A
664 667parallel
Strand 4
A
694 698parallel
Strand 5
A
718 721parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
639 641first strand
Strand 2
A
647 649anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 201first strand
Strand 2
B
184 191anti-parallel
Strand 3
B
159 167anti-parallel
Strand 4
B
131 140anti-parallel
Strand 5
B
367 378anti-parallel
Strand 6
B
332 342anti-parallel
Strand 7
B
286 295anti-parallel
Strand 8
B
277 280anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
629 633first strand
Strand 2
B
602 606parallel
Strand 3
B
664 667parallel
Strand 4
B
694 698parallel
Strand 5
B
718 721parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
639 641first strand
Strand 2
B
647 649anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
194 201first strand
Strand 2
C
184 191anti-parallel
Strand 3
C
159 167anti-parallel
Strand 4
C
131 140anti-parallel
Strand 5
C
367 377anti-parallel
Strand 6
C
333 342anti-parallel
Strand 7
C
286 295anti-parallel
Strand 8
C
277 280anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
629 633first strand
Strand 2
C
602 606parallel
Strand 3
C
664 667parallel
Strand 4
C
694 698parallel
Strand 5
C
718 721parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
639 641first strand
Strand 2
C
647 649anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
194 201first strand
Strand 2
D
184 191anti-parallel
Strand 3
D
159 167anti-parallel
Strand 4
D
131 140anti-parallel
Strand 5
D
367 377anti-parallel
Strand 6
D
333 342anti-parallel
Strand 7
D
286 295anti-parallel
Strand 8
D
277 280anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
629 633first strand
Strand 2
D
602 606parallel
Strand 3
D
664 667parallel
Strand 4
D
694 698parallel
Strand 5
D
718 721parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
639 641first strand
Strand 2
D
647 649anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il