Analysis of interatomic Contacts of Structural Units in PDB entry:
1QF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QF8 entry

There are 2 chains in PDB entry 1QF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7PRO 179
B
 GLU 6PRO 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1QF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 15Right-handed alpha
Helix 2
2
A
27 31Right-handed alpha
Helix 3
3
A
33 36Right-handed 310
Helix 4
4
A
39 41Right-handed 310
Helix 5
5
A
46 53Right-handed alpha
Helix 6
6
A
67 89Right-handed alpha
Helix 7
7
A
91 102Right-handed alpha
Helix 8
8
A
112 114Right-handed 310
Helix 9
9
A
149 151Right-handed 310
Helix 10
10
A
156 158Right-handed 310
Helix 11
11
A
164 167Right-handed 310
Helix 12
12
A
172 174Right-handed 310
Helix 13
13
B
9 14Right-handed alpha
Helix 14
14
B
27 31Right-handed alpha
Helix 15
15
B
33 36Right-handed 310
Helix 16
16
B
39 41Right-handed 310
Helix 17
17
B
46 53Right-handed alpha
Helix 18
18
B
68 89Right-handed alpha
Helix 19
19
B
91 102Right-handed alpha
Helix 20
20
B
112 114Right-handed 310
Helix 21
21
B
149 151Right-handed 310
Helix 22
22
B
156 158Right-handed 310
Helix 23
23
B
164 167Right-handed 310
Helix 24
24
B
172 174Right-handed 310
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There are 2 sheets in PDB entry 1QF8. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
142 145anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
142 145anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il