Analysis of interatomic Contacts of Structural Units in PDB entry:
1QGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QGD entry

There are 2 chains in PDB entry 1QGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 663
B
 SER 2LEU 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 1QGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 22Right-handed alpha
Helix 2
2
A
28 43Right-handed alpha
Helix 3
3
A
65 78Right-handed 310
Helix 4
4
A
84 89Right-handed alpha
Helix 5
5
A
118 137Right-handed alpha
Helix 6
6
A
155 159Right-handed alpha
Helix 7
7
A
161 172Right-handed alpha
Helix 8
8
A
193 195Right-handed 310
Helix 9
9
A
201 208Right-handed alpha
Helix 10
10
A
221 233Right-handed alpha
Helix 11
11
A
258 260Right-handed 310
Helix 12
12
A
267 277Right-handed alpha
Helix 13
13
A
288 294Right-handed alpha
Helix 14
14
A
297 317Right-handed alpha
Helix 15
15
A
319 330Right-handed alpha
Helix 16
16
A
337 350Right-handed alpha
Helix 17
17
A
357 371Right-handed alpha
Helix 18
18
A
383 386Right-handed alpha
Helix 19
19
A
411 424Right-handed alpha
Helix 20
20
A
435 439Right-handed 310
Helix 21
21
A
442 450Right-handed alpha
Helix 22
22
A
464 466Right-handed 310
Helix 23
23
A
478 483Right-handed alpha
Helix 24
24
A
496 508Right-handed alpha
Helix 25
25
A
530 538Right-handed alpha
Helix 26
26
A
558 573Right-handed 310
Helix 27
27
A
586 591Right-handed alpha
Helix 28
28
A
594 600Right-handed alpha
Helix 29
29
A
616 623Right-handed 310
Helix 30
30
A
641 647Right-handed alpha
Helix 31
31
A
652 660Right-handed alpha
Helix 32
32
B
4 22Right-handed alpha
Helix 33
33
B
28 43Right-handed alpha
Helix 34
34
B
65 78Right-handed 310
Helix 35
35
B
84 89Right-handed alpha
Helix 36
36
B
118 137Right-handed alpha
Helix 37
37
B
155 159Right-handed alpha
Helix 38
38
B
161 172Right-handed alpha
Helix 39
39
B
193 195Right-handed 310
Helix 40
40
B
201 207Right-handed alpha
Helix 41
41
B
221 233Right-handed alpha
Helix 42
42
B
258 260Right-handed 310
Helix 43
43
B
267 277Right-handed alpha
Helix 44
44
B
288 294Right-handed alpha
Helix 45
45
B
297 317Right-handed alpha
Helix 46
46
B
319 330Right-handed alpha
Helix 47
47
B
337 350Right-handed alpha
Helix 48
48
B
357 369Right-handed alpha
Helix 49
49
B
383 386Right-handed alpha
Helix 50
50
B
411 424Right-handed alpha
Helix 51
51
B
435 439Right-handed 310
Helix 52
52
B
442 450Right-handed alpha
Helix 53
53
B
464 466Right-handed 310
Helix 54
54
B
478 483Right-handed alpha
Helix 55
55
B
496 508Right-handed alpha
Helix 56
56
B
530 538Right-handed alpha
Helix 57
57
B
558 573Right-handed 310
Helix 58
58
B
586 590Right-handed alpha
Helix 59
59
B
594 600Right-handed alpha
Helix 60
60
B
616 623Right-handed 310
Helix 61
61
B
641 647Right-handed alpha
Helix 62
62
B
652 660Right-handed alpha
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There are 7 sheets in PDB entry 1QGD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
149 153parallel
Strand 3
A
178 184parallel
Strand 4
A
239 244parallel
Strand 5
A
211 213parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 379first strand
Strand 2
A
404 406parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 434first strand
Strand 2
A
455 460parallel
Strand 3
A
514 518parallel
Strand 4
A
489 491parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
628 630first strand
Strand 2
A
608 611parallel
Strand 3
A
552 556parallel
Strand 4
A
578 582parallel
Strand 5
A
541 544anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
149 153parallel
Strand 3
B
178 184parallel
Strand 4
B
239 244parallel
Strand 5
B
211 213parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
404 406first strand
Strand 2
B
375 379parallel
Strand 3
B
428 434parallel
Strand 4
B
456 460parallel
Strand 5
B
514 517parallel
Strand 6
B
489 491parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
628 630first strand
Strand 2
B
608 611parallel
Strand 3
B
552 556parallel
Strand 4
B
578 582parallel
Strand 5
B
541 544anti-parallel
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