Analysis of interatomic Contacts of Structural Units in PDB entry:
1QH6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QH6 entry

There are 2 chains in PDB entry 1QH6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2SER 207
B
 ILE 2SER 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1QH6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 63Right-handed alpha
Helix 2
2
A
159 168Right-handed alpha
Helix 3
3
B
60 63Right-handed alpha
Helix 4
4
B
159 168Right-handed alpha
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There are 4 sheets in PDB entry 1QH6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
45 53anti-parallel
Strand 4
A
175 186anti-parallel
Strand 5
A
80 89anti-parallel
Strand 6
A
93 101anti-parallel
Strand 7
A
141 148parallel
Strand 8
A
120 129anti-parallel
Strand 9
A
113 117anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
189 201anti-parallel
Strand 4
A
66 77anti-parallel
Strand 5
A
154 157anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
14 20anti-parallel
Strand 3
B
45 53anti-parallel
Strand 4
B
175 186anti-parallel
Strand 5
B
80 89anti-parallel
Strand 6
B
93 101anti-parallel
Strand 7
B
141 148parallel
Strand 8
B
120 129anti-parallel
Strand 9
B
113 117anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 30first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
189 201anti-parallel
Strand 4
B
66 77anti-parallel
Strand 5
B
154 157anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il