Analysis of interatomic Contacts of Structural Units in PDB entry:
1QI9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QI9 entry

There are 2 chains in PDB entry 1QI9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 2VAL 556
B
THR 2VAL 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1QI9. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 37Right-handed alpha
Helix 2
2
A
67 80Right-handed alpha
Helix 3
3
A
83 87Right-handed alpha
Helix 4
4
A
132 147Right-handed alpha
Helix 5
5
A
159 170Right-handed alpha
Helix 6
6
A
190 193Right-handed alpha
Helix 7
7
A
210 213Right-handed alpha
Helix 8
8
A
240 247Right-handed alpha
Helix 9
9
A
268 277Right-handed alpha
Helix 10
10
A
282 293Right-handed alpha
Helix 11
11
A
320 342Right-handed alpha
Helix 12
12
A
350 362Right-handed alpha
Helix 13
13
A
371 374Right-handed alpha
Helix 14
14
A
377 390Right-handed alpha
Helix 15
15
A
417 433Right-handed alpha
Helix 16
16
A
435 438Right-handed alpha
Helix 17
17
A
465 483Right-handed alpha
Helix 18
18
A
488 512Right-handed alpha
Helix 19
1
B
15 37Right-handed alpha
Helix 20
2
B
67 80Right-handed alpha
Helix 21
3
B
83 87Right-handed alpha
Helix 22
4
B
132 147Right-handed alpha
Helix 23
5
B
159 170Right-handed alpha
Helix 24
6
B
190 193Right-handed alpha
Helix 25
7
B
210 213Right-handed alpha
Helix 26
8
B
240 247Right-handed alpha
Helix 27
9
B
268 277Right-handed alpha
Helix 28
10
B
282 293Right-handed alpha
Helix 29
11
B
320 342Right-handed alpha
Helix 30
12
B
350 362Right-handed alpha
Helix 31
13
B
371 374Right-handed alpha
Helix 32
14
B
377 390Right-handed alpha
Helix 33
15
B
417 433Right-handed alpha
Helix 34
16
B
435 438Right-handed alpha
Helix 35
17
B
465 483Right-handed alpha
Helix 36
18
B
488 512Right-handed alpha
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There are 6 sheets in PDB entry 1QI9. Click on sheet of interest to get list of strands forming it: S1, S2, S3, S4, S5, S6,

There are 2 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
216 218first strand
Strand 2
A
221 223anti-parallel
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There are 2 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
445 449first strand
Strand 2
A
454 458anti-parallel
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There are 4 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
517 522first strand
Strand 2
A
527 533anti-parallel
Strand 3
A
537 539anti-parallel
Strand 4
A
542 543anti-parallel
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There are 2 strands in S4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
216 218first strand
Strand 2
B
221 223anti-parallel
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There are 2 strands in S5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
446 448first strand
Strand 2
B
455 457anti-parallel
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There are 4 strands in S6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
518 522first strand
Strand 2
B
528 532anti-parallel
Strand 3
B
537 539anti-parallel
Strand 4
B
542 543anti-parallel
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