Analysis of interatomic Contacts of Structural Units in PDB entry:
1QIC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QIC entry

There are 4 chains in PDB entry 1QIC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 89PRO 249
B
 ILE 89PRO 249
C
 ILE 89PRO 249
D
 ILE 89PRO 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1QIC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
110 126Right-handed alpha
Helix 2
2
A
195 206Right-handed alpha
Helix 3
3
A
229 231Right-handed 310
Helix 4
4
A
236 246Right-handed alpha
Helix 5
5
B
110 126Right-handed alpha
Helix 6
6
B
195 206Right-handed alpha
Helix 7
7
B
229 231Right-handed 310
Helix 8
8
B
236 246Right-handed alpha
Helix 9
9
C
110 126Right-handed alpha
Helix 10
10
C
195 206Right-handed alpha
Helix 11
11
C
229 231Right-handed 310
Helix 12
12
C
236 246Right-handed alpha
Helix 13
13
D
110 126Right-handed alpha
Helix 14
14
D
195 206Right-handed alpha
Helix 15
15
D
229 231Right-handed 310
Helix 16
16
D
236 246Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1QIC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
96 101parallel
Strand 3
A
142 147parallel
Strand 4
A
178 181parallel
Strand 5
A
165 167anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
96 101parallel
Strand 3
B
142 147parallel
Strand 4
B
178 181parallel
Strand 5
B
165 167anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 134first strand
Strand 2
C
96 101parallel
Strand 3
C
142 147parallel
Strand 4
C
178 181parallel
Strand 5
C
165 167anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
131 134first strand
Strand 2
D
96 101parallel
Strand 3
D
142 147parallel
Strand 4
D
178 181parallel
Strand 5
D
165 167anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il