Analysis of interatomic Contacts of Structural Units in PDB entry:
1QIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QIN entry

There are 2 chains in PDB entry 1QIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 8MET 183
B
 GLY 8MET 183
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1QIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 17Right-handed alpha
Helix 2
2
A
24 26Right-handed 310
Helix 3
3
A
41 50Right-handed alpha
Helix 4
4
A
77 79Right-handed 310
Helix 5
5
A
84 93Right-handed alpha
Helix 6
6
A
106 108Right-handed 310
Helix 7
7
A
134 143Right-handed alpha
Helix 8
8
A
176 178Right-handed 310
Helix 9
9
B
12 18Right-handed alpha
Helix 10
10
B
24 26Right-handed 310
Helix 11
11
B
41 50Right-handed alpha
Helix 12
12
B
77 79Right-handed 310
Helix 13
13
B
84 93Right-handed alpha
Helix 14
14
B
106 108Right-handed 310
Helix 15
15
B
134 144Right-handed alpha
Helix 16
16
B
176 178Right-handed 310
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There are 4 sheets in PDB entry 1QIN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
97 103parallel
Strand 3
A
67 73anti-parallel
Strand 4
A
55 62anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
170 174parallel
Strand 3
A
160 164anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 38first strand
Strand 2
B
97 103parallel
Strand 3
B
67 73anti-parallel
Strand 4
B
55 62anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 130first strand
Strand 2
B
170 174parallel
Strand 3
B
160 164anti-parallel
Strand 4
B
147 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il