Analysis of interatomic Contacts of Structural Units in PDB entry:
1QJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QJ5 entry

There are 2 chains in PDB entry 1QJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 429
B
 MET 1GLN 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1QJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 12Right-handed alpha
Helix 2
2
A
62 74Right-handed alpha
Helix 3
3
A
86 98Right-handed alpha
Helix 4
4
A
112 129Right-handed alpha
Helix 5
5
A
149 154Right-handed alpha
Helix 6
6
A
162 165Right-handed 310
Helix 7
7
A
188 201Right-handed 310
Helix 8
8
A
225 238Right-handed 310
Helix 9
9
A
259 263Right-handed 310
Helix 10
10
A
290 297Right-handed alpha
Helix 11
11
A
314 329Right-handed alpha
Helix 12
12
A
331 352Right-handed alpha
Helix 13
13
A
376 386Right-handed alpha
Helix 14
14
A
407 421Right-handed alpha
Helix 15
15
A
424 426Right-handed 310
Helix 16
16
B
3 12Right-handed alpha
Helix 17
17
B
62 74Right-handed alpha
Helix 18
18
B
86 98Right-handed alpha
Helix 19
19
B
112 130Right-handed alpha
Helix 20
20
B
149 154Right-handed alpha
Helix 21
21
B
162 165Right-handed 310
Helix 22
22
B
188 204Right-handed 310
Helix 23
23
B
225 238Right-handed 310
Helix 24
24
B
259 262Right-handed 310
Helix 25
25
B
290 298Right-handed alpha
Helix 26
26
B
314 329Right-handed alpha
Helix 27
27
B
331 352Right-handed alpha
Helix 28
28
B
376 386Right-handed alpha
Helix 29
29
B
407 420Right-handed alpha
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There are 6 sheets in PDB entry 1QJ5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
36 39anti-parallel
Strand 3
A
29 33anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
136 140parallel
Strand 3
A
205 210parallel
Strand 4
A
241 245parallel
Strand 5
A
269 272parallel
Strand 6
A
284 289anti-parallel
Strand 7
A
103 109anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
365 370anti-parallel
Strand 3
A
356 362anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
36 39anti-parallel
Strand 3
B
29 33anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 175first strand
Strand 2
B
136 140parallel
Strand 3
B
205 210parallel
Strand 4
B
241 245parallel
Strand 5
B
269 272parallel
Strand 6
B
284 289anti-parallel
Strand 7
B
103 109anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 399first strand
Strand 2
B
365 370anti-parallel
Strand 3
B
356 362anti-parallel
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