Analysis of interatomic Contacts of Structural Units in PDB entry:
1QJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QJB entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 1QJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 232
B
 MET 1THR 232
Q
 ALA 3HIS 6
Q
 TYR 8ALA 10
S
 ARG 4HIS 6
S
 TYR 8ALA 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 1QJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 16Right-handed alpha
Helix 2
2
A
18 32Right-handed alpha
Helix 3
3
A
37 67Right-handed alpha
Helix 4
4
A
76 104Right-handed alpha
Helix 5
5
A
111 131Right-handed alpha
Helix 6
6
A
141 160Right-handed alpha
Helix 7
7
A
164 181Right-handed alpha
Helix 8
8
A
184 201Right-handed alpha
Helix 9
9
A
202 206Right-handed 310
Helix 10
10
A
210 229Right-handed alpha
Helix 11
11
B
2 16Right-handed alpha
Helix 12
12
B
18 32Right-handed alpha
Helix 13
13
B
37 69Right-handed alpha
Helix 14
14
B
72 104Right-handed alpha
Helix 15
15
B
104 109Right-handed alpha
Helix 16
16
B
111 133Right-handed alpha
Helix 17
17
B
141 160Right-handed alpha
Helix 18
18
B
164 181Right-handed alpha
Helix 19
19
B
184 201Right-handed alpha
Helix 20
20
B
202 206Right-handed 310
Helix 21
21
B
210 229Right-handed alpha
Back to top of page
There are no sheets in PDB entry 1QJB
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il