Analysis of interatomic Contacts of Structural Units in PDB entry:
1QJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QJM entry

There is 1 chain in PDB entry 1QJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 689
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1QJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 29Right-handed alpha
Helix 2
2
A
41 51Right-handed alpha
Helix 3
3
A
60 69Right-handed alpha
Helix 4
4
A
105 109Right-handed 310
Helix 5
5
A
125 132Right-handed alpha
Helix 6
6
A
133 136Right-handed 310
Helix 7
7
A
144 153Right-handed alpha
Helix 8
8
A
166 170Right-handed 310
Helix 9
9
A
190 201Right-handed alpha
Helix 10
10
A
220 225Right-handed alpha
Helix 11
11
A
263 279Right-handed alpha
Helix 12
12
A
315 321Right-handed alpha
Helix 13
13
A
321 331Right-handed alpha
Helix 14
14
A
334 344Right-handed alpha
Helix 15
15
A
351 365Right-handed alpha
Helix 16
16
A
376 387Right-handed alpha
Helix 17
17
A
395 405Right-handed alpha
Helix 18
18
A
423 428Right-handed alpha
Helix 19
19
A
467 479Right-handed alpha
Helix 20
20
A
499 503Right-handed 310
Helix 21
21
A
524 535Right-handed alpha
Helix 22
22
A
545 552Right-handed alpha
Helix 23
23
A
558 563Right-handed alpha
Helix 24
24
A
565 567Right-handed 310
Helix 25
25
A
582 586Right-handed 310
Helix 26
26
A
603 619Right-handed alpha
Helix 27
27
A
624 629Right-handed alpha
Helix 28
28
A
656 662Right-handed alpha
Helix 29
29
A
662 673Right-handed alpha
Helix 30
30
A
678 689Right-handed alpha
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There are 10 sheets in PDB entry 1QJM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
34 38parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
254 258anti-parallel
Strand 3
A
74 80anti-parallel
Strand 4
A
307 309anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
91 99anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
227 231anti-parallel
Strand 3
A
91 99anti-parallel
Strand 4
A
207 210anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
227 231anti-parallel
Strand 3
A
91 99anti-parallel
Strand 4
A
248 251anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
156 157parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 350first strand
Strand 2
A
370 374parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
596 599anti-parallel
Strand 3
A
408 415anti-parallel
Strand 4
A
645 649anti-parallel
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There are 6 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 491first strand
Strand 2
A
455 458parallel
Strand 3
A
540 544parallel
Strand 4
A
433 440anti-parallel
Strand 5
A
569 573anti-parallel
Strand 6
A
577 580anti-parallel
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There are 5 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 491first strand
Strand 2
A
455 458parallel
Strand 3
A
540 544parallel
Strand 4
A
433 440anti-parallel
Strand 5
A
590 592anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il