Analysis of interatomic Contacts of Structural Units in PDB entry:
1QJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QJR entry

There is 1 chain in PDB entry 1QJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1SER 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1QJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
16 28Right-handed alpha
Helix 3
3
A
35 50Right-handed alpha
Helix 4
4
A
53 59Right-handed alpha
Helix 5
5
A
69 74Right-handed alpha
Helix 6
6
A
77 81Right-handed 310
Helix 7
7
A
81 85Right-handed 310
Helix 8
8
A
86 102Right-handed alpha
Helix 9
9
A
104 120Right-handed alpha
Helix 10
10
A
150 162Right-handed alpha
Helix 11
11
A
164 173Right-handed alpha
Helix 12
12
A
174 177Right-handed 310
Helix 13
13
A
201 209Right-handed alpha
Helix 14
14
A
235 243Right-handed alpha
Helix 15
15
A
243 252Right-handed alpha
Helix 16
16
A
256 274Right-handed alpha
Helix 17
17
A
277 281Right-handed 310
Helix 18
18
A
285 288Right-handed 310
Helix 19
19
A
305 308Right-handed 310
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There are 3 sheets in PDB entry 1QJR. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
282 283anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
190 191anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
233 234anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il