Analysis of interatomic Contacts of Structural Units in PDB entry:
1QM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QM5 entry

There are 2 chains in PDB entry 1QM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ARG 796
B
 SER 1ARG 796
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 92 helices in PDB entry 1QM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 21Right-handed alpha
Helix 2
2
A
25 29Right-handed 310
Helix 3
3
A
30 48Right-handed alpha
Helix 4
4
A
73 82Right-handed alpha
Helix 5
5
A
83 93Right-handed alpha
Helix 6
6
A
97 103Right-handed alpha
Helix 7
7
A
113 129Right-handed alpha
Helix 8
8
A
162 166Right-handed 310
Helix 9
9
A
173 176Right-handed 310
Helix 10
10
A
229 235Right-handed alpha
Helix 11
11
A
239 241Right-handed 310
Helix 12
12
A
242 250Right-handed alpha
Helix 13
13
A
251 253Right-handed 310
Helix 14
14
A
261 290Right-handed alpha
Helix 15
15
A
293 295Right-handed 310
Helix 16
16
A
296 300Right-handed alpha
Helix 17
17
A
312 325Right-handed alpha
Helix 18
18
A
328 339Right-handed alpha
Helix 19
19
A
348 352Right-handed 310
Helix 20
20
A
357 364Right-handed alpha
Helix 21
21
A
364 386Right-handed alpha
Helix 22
22
A
389 397Right-handed alpha
Helix 23
23
A
406 414Right-handed alpha
Helix 24
24
A
421 431Right-handed alpha
Helix 25
25
A
433 440Right-handed alpha
Helix 26
26
A
452 457Right-handed alpha
Helix 27
27
A
461 472Right-handed alpha
Helix 28
28
A
479 491Right-handed 310
Helix 29
29
A
492 519Right-handed alpha
Helix 30
30
A
536 539Right-handed 310
Helix 31
31
A
540 558Right-handed alpha
Helix 32
32
A
578 598Right-handed alpha
Helix 33
33
A
601 603Right-handed 310
Helix 34
34
A
614 622Right-handed alpha
Helix 35
35
A
623 625Right-handed 310
Helix 36
36
A
641 649Right-handed alpha
Helix 37
37
A
660 669Right-handed alpha
Helix 38
38
A
670 673Right-handed 310
Helix 39
39
A
679 689Right-handed alpha
Helix 40
40
A
692 700Right-handed alpha
Helix 41
41
A
700 713Right-handed alpha
Helix 42
42
A
723 730Right-handed alpha
Helix 43
43
A
739 760Right-handed alpha
Helix 44
44
A
760 774Right-handed alpha
Helix 45
45
A
775 778Right-handed 310
Helix 46
46
A
779 791Right-handed alpha
Helix 47
1
B
6 21Right-handed alpha
Helix 48
2
B
25 29Right-handed 310
Helix 49
3
B
30 48Right-handed alpha
Helix 50
4
B
73 82Right-handed alpha
Helix 51
5
B
83 93Right-handed alpha
Helix 52
6
B
97 103Right-handed alpha
Helix 53
7
B
113 129Right-handed alpha
Helix 54
8
B
162 166Right-handed 310
Helix 55
9
B
173 176Right-handed 310
Helix 56
10
B
229 235Right-handed alpha
Helix 57
11
B
239 241Right-handed 310
Helix 58
12
B
242 250Right-handed alpha
Helix 59
13
B
251 253Right-handed 310
Helix 60
14
B
261 290Right-handed alpha
Helix 61
15
B
293 295Right-handed 310
Helix 62
16
B
296 300Right-handed alpha
Helix 63
17
B
312 325Right-handed alpha
Helix 64
18
B
328 339Right-handed alpha
Helix 65
19
B
348 352Right-handed 310
Helix 66
20
B
357 364Right-handed alpha
Helix 67
21
B
364 386Right-handed alpha
Helix 68
22
B
389 397Right-handed alpha
Helix 69
23
B
406 414Right-handed alpha
Helix 70
24
B
421 431Right-handed alpha
Helix 71
25
B
433 440Right-handed alpha
Helix 72
26
B
452 457Right-handed alpha
Helix 73
27
B
461 472Right-handed alpha
Helix 74
28
B
479 491Right-handed 310
Helix 75
29
B
492 519Right-handed alpha
Helix 76
30
B
536 539Right-handed 310
Helix 77
31
B
540 558Right-handed alpha
Helix 78
32
B
578 598Right-handed alpha
Helix 79
33
B
601 603Right-handed 310
Helix 80
34
B
614 622Right-handed alpha
Helix 81
35
B
623 625Right-handed 310
Helix 82
36
B
641 649Right-handed alpha
Helix 83
37
B
660 669Right-handed alpha
Helix 84
38
B
670 673Right-handed 310
Helix 85
39
B
679 689Right-handed alpha
Helix 86
40
B
692 700Right-handed alpha
Helix 87
41
B
700 713Right-handed alpha
Helix 88
42
B
723 730Right-handed alpha
Helix 89
43
B
739 760Right-handed alpha
Helix 90
44
B
760 774Right-handed alpha
Helix 91
45
B
775 778Right-handed 310
Helix 92
46
B
779 791Right-handed alpha
Back to top of page

There are 14 sheets in PDB entry 1QM5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
60 64parallel
Strand 3
A
301 306parallel
Strand 4
A
340 343parallel
Strand 5
A
416 419parallel
Strand 6
A
444 446parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
153 157anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 181first strand
Strand 2
A
195 202anti-parallel
Strand 3
A
219 223anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
214 216anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 356first strand
Strand 2
A
403 405anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 532first strand
Strand 2
A
566 571parallel
Strand 3
A
605 610parallel
Back to list of sheets
Back to top of page

There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 630first strand
Strand 2
A
652 655parallel
Back to list of sheets
Back to top of page

There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
60 64parallel
Strand 3
B
301 306parallel
Strand 4
B
340 343parallel
Strand 5
B
416 419parallel
Strand 6
B
444 446parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 150first strand
Strand 2
B
153 157anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 181first strand
Strand 2
B
195 202anti-parallel
Strand 3
B
219 223anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 207first strand
Strand 2
B
214 216anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 356first strand
Strand 2
B
403 405anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 532first strand
Strand 2
B
566 571parallel
Strand 3
B
605 610parallel
Back to list of sheets
Back to top of page

There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
627 630first strand
Strand 2
B
652 655parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il