Analysis of interatomic Contacts of Structural Units in PDB entry:
1QMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QMB entry

There are 2 chains in PDB entry 1QMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 25PHE 352
B
 LEU 353LYS 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1QMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 45Right-handed alpha
Helix 2
2
A
53 65Right-handed alpha
Helix 3
3
A
66 68Right-handed 310
Helix 4
4
A
69 80Right-handed alpha
Helix 5
5
A
88 104Right-handed alpha
Helix 6
6
A
127 138Right-handed alpha
Helix 7
7
A
149 165Right-handed alpha
Helix 8
8
A
259 266Right-handed alpha
Helix 9
9
A
268 278Right-handed alpha
Helix 10
10
A
299 305Right-handed alpha
Helix 11
11
A
309 313Right-handed 310
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There are 4 sheets in PDB entry 1QMB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
111 121parallel
Strand 3
A
182 193anti-parallel
Strand 4
A
344 352anti-parallel
Strand 5
A
333 340anti-parallel
Strand 6
A
291 298anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 289first strand
Strand 2
A
214 227anti-parallel
Strand 3
A
204 211anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
237 244anti-parallel
Strand 3
A
248 255anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 376first strand
Strand 2
B
381 388anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il