Analysis of interatomic Contacts of Structural Units in PDB entry:
1QMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QMF entry

There is 1 chain in PDB entry 1QMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 71ASP 750
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1QMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
194 199Right-handed alpha
Helix 2
2
A
217 223Right-handed alpha
Helix 3
3
A
223 229Right-handed alpha
Helix 4
4
A
266 285Right-handed alpha
Helix 5
5
A
335 338Right-handed 310
Helix 6
6
A
339 350Right-handed alpha
Helix 7
7
A
373 378Right-handed alpha
Helix 8
8
A
388 394Right-handed alpha
Helix 9
9
A
396 408Right-handed alpha
Helix 10
10
A
408 419Right-handed alpha
Helix 11
11
A
443 448Right-handed alpha
Helix 12
12
A
449 451Right-handed 310
Helix 13
13
A
457 470Right-handed alpha
Helix 14
14
A
504 521Right-handed alpha
Helix 15
15
A
596 618Right-handed alpha
Helix 16
16
A
645 655Right-handed alpha
Helix 17
17
A
703 714Right-handed alpha
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There are 8 sheets in PDB entry 1QMF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
79 80anti-parallel
Strand 4
A
260 263parallel
Strand 5
A
480 485anti-parallel
Strand 6
A
490 493anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 205first strand
Strand 2
A
211 215anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 307first strand
Strand 2
A
288 295anti-parallel
Strand 3
A
583 590anti-parallel
Strand 4
A
568 576anti-parallel
Strand 5
A
545 552anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 360first strand
Strand 2
A
385 387anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
370 371anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 475first strand
Strand 2
A
498 500anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
659 663first strand
Strand 2
A
685 690parallel
Strand 3
A
669 672anti-parallel
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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
717 721first strand
Strand 2
A
743 749parallel
Strand 3
A
726 730anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il