Analysis of interatomic Contacts of Structural Units in PDB entry:
1QMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QMI entry

There are 4 chains in PDB entry 1QMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 5GLU 339
B
 MSE 5GLU 339
C
 MSE 5GLU 339
D
 MSE 5GLU 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 1QMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 31Right-handed alpha
Helix 2
2
A
49 63Right-handed alpha
Helix 3
3
A
98 110Right-handed alpha
Helix 4
4
A
111 113Right-handed 310
Helix 5
5
A
132 147Right-handed alpha
Helix 6
6
A
202 217Right-handed alpha
Helix 7
7
A
228 232Right-handed 310
Helix 8
8
A
259 276Right-handed alpha
Helix 9
9
A
282 296Right-handed alpha
Helix 10
10
A
307 321Right-handed alpha
Helix 11
11
B
17 31Right-handed alpha
Helix 12
12
B
49 63Right-handed alpha
Helix 13
13
B
98 110Right-handed alpha
Helix 14
14
B
133 139Right-handed alpha
Helix 15
15
B
140 147Right-handed alpha
Helix 16
16
B
203 217Right-handed alpha
Helix 17
17
B
228 232Right-handed 310
Helix 18
18
B
259 276Right-handed alpha
Helix 19
19
B
282 297Right-handed alpha
Helix 20
20
B
307 321Right-handed alpha
Helix 21
21
C
17 31Right-handed alpha
Helix 22
22
C
49 63Right-handed alpha
Helix 23
23
C
98 107Right-handed alpha
Helix 24
24
C
108 112Right-handed 310
Helix 25
25
C
133 139Right-handed alpha
Helix 26
26
C
139 147Right-handed alpha
Helix 27
27
C
202 217Right-handed alpha
Helix 28
28
C
228 232Right-handed 310
Helix 29
29
C
259 276Right-handed alpha
Helix 30
30
C
282 296Right-handed alpha
Helix 31
31
C
307 321Right-handed alpha
Helix 32
32
D
17 31Right-handed alpha
Helix 33
33
D
49 63Right-handed alpha
Helix 34
34
D
98 111Right-handed alpha
Helix 35
35
D
133 139Right-handed alpha
Helix 36
36
D
140 147Right-handed alpha
Helix 37
37
D
204 215Right-handed alpha
Helix 38
38
D
228 232Right-handed 310
Helix 39
39
D
259 276Right-handed alpha
Helix 40
40
D
282 297Right-handed alpha
Helix 41
41
D
307 321Right-handed alpha
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There are 16 sheets in PDB entry 1QMI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
77 80anti-parallel
Strand 3
A
66 68anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
117 123parallel
Strand 3
A
166 173anti-parallel
Strand 4
A
150 157anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 227first strand
Strand 2
A
194 199parallel
Strand 3
A
234 242anti-parallel
Strand 4
A
247 253anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 303first strand
Strand 2
A
334 338anti-parallel
Strand 3
A
325 329anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
77 80anti-parallel
Strand 3
B
66 68anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
117 123parallel
Strand 3
B
166 173anti-parallel
Strand 4
B
150 157anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 227first strand
Strand 2
B
194 199parallel
Strand 3
B
234 242anti-parallel
Strand 4
B
247 253anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 303first strand
Strand 2
B
334 338anti-parallel
Strand 3
B
325 329anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 36first strand
Strand 2
C
77 80anti-parallel
Strand 3
C
66 68anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 92first strand
Strand 2
C
117 123parallel
Strand 3
C
166 173anti-parallel
Strand 4
C
150 157anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
222 227first strand
Strand 2
C
194 199parallel
Strand 3
C
234 242anti-parallel
Strand 4
C
247 253anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
300 303first strand
Strand 2
C
334 338anti-parallel
Strand 3
C
325 329anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
34 36first strand
Strand 2
D
77 80anti-parallel
Strand 3
D
66 68anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
117 123first strand
Strand 2
D
166 173anti-parallel
Strand 3
D
150 157anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
222 227first strand
Strand 2
D
194 199parallel
Strand 3
D
234 242anti-parallel
Strand 4
D
247 253anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
300 303first strand
Strand 2
D
334 338anti-parallel
Strand 3
D
325 329anti-parallel
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