Analysis of interatomic Contacts of Structural Units in PDB entry:
1QMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QMJ entry

There are 2 chains in PDB entry 1QMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2SER 134
B
 GLN 2SER 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1QMJ

There are 6 sheets in PDB entry 1QMJ. Click on sheet of interest to get list of strands forming it: A1, A2, A3, B1, B2, B3,

There are 5 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
119 124anti-parallel
Strand 3
A
30 37anti-parallel
Strand 4
A
40 51anti-parallel
Strand 5
A
54 64anti-parallel
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There are 5 strands in A2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
95 99anti-parallel
Strand 3
A
84 91anti-parallel
Strand 4
A
17 23anti-parallel
Strand 5
A
126 133anti-parallel
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There are 2 strands in A3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 74first strand
Strand 2
A
54 64anti-parallel
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There are 5 strands in B1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 11first strand
Strand 2
B
117 124anti-parallel
Strand 3
B
30 37anti-parallel
Strand 4
B
40 51anti-parallel
Strand 5
B
54 64anti-parallel
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There are 5 strands in B2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 109first strand
Strand 2
B
95 99anti-parallel
Strand 3
B
84 91anti-parallel
Strand 4
B
17 23anti-parallel
Strand 5
B
126 133anti-parallel
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There are 2 strands in B3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 73first strand
Strand 2
A
54 64anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il