Analysis of interatomic Contacts of Structural Units in PDB entry:
1QML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QML entry

There is 1 chain in PDB entry 1QML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1QML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 17Right-handed 310
Helix 2
2
A
18 22Right-handed 310
Helix 3
3
A
25 29Right-handed 310
Helix 4
4
A
37 39Right-handed 310
Helix 5
5
A
70 81Right-handed alpha
Helix 6
6
A
115 123Right-handed alpha
Helix 7
7
A
153 172Right-handed alpha
Helix 8
8
A
184 196Right-handed alpha
Helix 9
9
A
243 255Right-handed alpha
Helix 10
10
A
265 267Right-handed 310
Helix 11
11
A
268 279Right-handed alpha
Helix 12
12
A
289 302Right-handed alpha
Helix 13
13
A
306 322Right-handed alpha
Helix 14
14
A
330 338Right-handed alpha
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There are 3 sheets in PDB entry 1QML. Click on sheet of interest to get list of strands forming it: A, A1, B,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
64 66anti-parallel
Strand 3
A
41 48parallel
Strand 4
A
325 327parallel
Strand 5
A
284 287parallel
Strand 6
A
259 263parallel
Strand 7
A
203 210parallel
Strand 8
A
175 178parallel
Strand 9
A
127 132parallel
Strand 10
A
85 91parallel
Strand 11
A
41 48parallel
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There are 11 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
64 66anti-parallel
Strand 3
A
41 48parallel
Strand 4
A
85 91parallel
Strand 5
A
127 132parallel
Strand 6
A
175 178parallel
Strand 7
A
203 210parallel
Strand 8
A
259 263parallel
Strand 9
A
284 287parallel
Strand 10
A
325 327parallel
Strand 11
A
41 48parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
150 152anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il