Analysis of interatomic Contacts of Structural Units in PDB entry:
1QMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QMP entry

There are 8 chains in PDB entry 1QMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 54
A
 ILE 56VAL 128
B
 SER 2LEU 54
B
 ILE 56VAL 128
C
 SER 2LEU 54
C
 ILE 56VAL 128
D
 SER 2LEU 54
D
 ILE 56VAL 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1QMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A1
A
11 24Right-handed alpha
Helix 2
A2
A
36 47Right-handed alpha
Helix 3
A3
A
62 74Right-handed alpha
Helix 4
A4
A
88 98Right-handed alpha
Helix 5
A5
A
109 122Right-handed alpha
Helix 6
B1
B
11 24Right-handed alpha
Helix 7
B2
B
36 47Right-handed alpha
Helix 8
B3
B
62 72Right-handed alpha
Helix 9
B4
B
88 98Right-handed alpha
Helix 10
B5
B
109 122Right-handed alpha
Helix 11
C1
C
11 24Right-handed alpha
Helix 12
C2
C
36 47Right-handed alpha
Helix 13
C3
C
62 74Right-handed alpha
Helix 14
C4
C
88 98Right-handed alpha
Helix 15
C5
C
109 122Right-handed alpha
Helix 16
D1
D
11 24Right-handed alpha
Helix 17
D2
D
36 47Right-handed alpha
Helix 18
D3
D
62 72Right-handed alpha
Helix 19
D4
D
88 98Right-handed alpha
Helix 20
D5
D
109 122Right-handed alpha
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There are 4 sheets in PDB entry 1QMP. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
79 84parallel
Strand 3
A
51 54parallel
Strand 4
A
3 8parallel
Strand 5
A
28 34parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 105first strand
Strand 2
B
79 84parallel
Strand 3
B
51 54parallel
Strand 4
B
3 8parallel
Strand 5
B
28 34parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 105first strand
Strand 2
C
79 84parallel
Strand 3
C
51 54parallel
Strand 4
C
3 8parallel
Strand 5
C
28 34parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 105first strand
Strand 2
D
79 84parallel
Strand 3
D
51 54parallel
Strand 4
D
3 8parallel
Strand 5
D
28 34parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il