Analysis of interatomic Contacts of Structural Units in PDB entry:
1QMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QMU entry

There is 1 chain in PDB entry 1QMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4THR 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1QMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 30Right-handed alpha
Helix 2
2
A
78 95Right-handed alpha
Helix 3
3
A
98 108Right-handed alpha
Helix 4
4
A
117 123Right-handed alpha
Helix 5
5
A
159 172Right-handed alpha
Helix 6
6
A
206 219Right-handed alpha
Helix 7
7
A
221 226Right-handed alpha
Helix 8
8
A
239 241Right-handed 310
Helix 9
9
A
246 250Right-handed alpha
Helix 10
10
A
255 264Right-handed alpha
Helix 11
11
A
283 301Right-handed alpha
Helix 12
12
A
302 304Right-handed 310
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There are 4 sheets in PDB entry 1QMU. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
65 70parallel
Strand 5
A
174 181parallel
Strand 6
A
267 274parallel
Strand 7
A
184 189anti-parallel
Strand 8
A
243 245parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 375first strand
Strand 2
A
305 309parallel
Strand 3
A
340 343anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
378 380parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
348 355anti-parallel
Strand 3
A
362 368anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il