Analysis of interatomic Contacts of Structural Units in PDB entry:
1QMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1QMV entry

There are 20 chains in PDB entry 1QMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	VAL 50
A	PRO 52	ASN 198
B	SER 3	VAL 50
B	PRO 52	ASN 198
C	SER 3	VAL 50
C	PRO 52	ASN 198
D	SER 3	VAL 50
D	PRO 52	ASN 198
E	SER 3	VAL 50
E	PRO 52	ASN 198
F	SER 3	VAL 50
F	PRO 52	ASN 198
G	SER 3	VAL 50
G	PRO 52	ASN 198
H	SER 3	VAL 50
H	PRO 52	ASN 198
I	SER 3	VAL 50
I	PRO 52	ASN 198
J	SER 3	VAL 50
J	PRO 52	ASN 198

There are 77 helices in PDB entry 1QMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	31	34	Right-handed 310
Helix 2	2	A	52	61	Right-handed alpha
Helix 3	3	A	61	67	Right-handed alpha
Helix 4	4	A	79	88	Right-handed alpha
Helix 5	5	A	90	94	Right-handed 310
Helix 6	6	A	109	115	Right-handed alpha
Helix 7	7	A	151	169	Right-handed alpha
Helix 8	8	A	186	198	Right-handed alpha
Helix 9	9	B	31	34	Right-handed 310
Helix 10	10	B	52	61	Right-handed alpha
Helix 11	11	B	61	67	Right-handed alpha
Helix 12	12	B	79	88	Right-handed alpha
Helix 13	13	B	90	94	Right-handed 310
Helix 14	14	B	109	115	Right-handed alpha
Helix 15	15	B	151	169	Right-handed alpha
Helix 16	16	B	190	198	Right-handed alpha
Helix 17	17	C	31	34	Right-handed 310
Helix 18	18	C	52	61	Right-handed alpha
Helix 19	19	C	61	68	Right-handed alpha
Helix 20	20	C	79	88	Right-handed alpha
Helix 21	21	C	90	94	Right-handed 310
Helix 22	22	C	109	115	Right-handed alpha
Helix 23	23	C	151	169	Right-handed alpha
Helix 24	24	C	190	197	Right-handed alpha
Helix 25	25	D	31	34	Right-handed 310
Helix 26	26	D	52	61	Right-handed alpha
Helix 27	27	D	61	68	Right-handed alpha
Helix 28	28	D	79	88	Right-handed alpha
Helix 29	29	D	90	94	Right-handed 310
Helix 30	30	D	109	115	Right-handed alpha
Helix 31	31	D	151	169	Right-handed alpha
Helix 32	32	D	189	197	Right-handed alpha
Helix 33	33	E	31	34	Right-handed 310
Helix 34	34	E	52	61	Right-handed alpha
Helix 35	35	E	61	67	Right-handed alpha
Helix 36	36	E	79	88	Right-handed alpha
Helix 37	37	E	90	94	Right-handed 310
Helix 38	38	E	109	115	Right-handed alpha
Helix 39	39	E	151	169	Right-handed alpha
Helix 40	40	E	189	197	Right-handed alpha
Helix 41	41	F	31	34	Right-handed 310
Helix 42	42	F	52	68	Right-handed alpha
Helix 43	43	F	79	88	Right-handed alpha
Helix 44	44	F	90	94	Right-handed 310
Helix 45	45	F	109	115	Right-handed alpha
Helix 46	46	F	151	168	Right-handed alpha
Helix 47	47	F	190	198	Right-handed alpha
Helix 48	48	G	31	34	Right-handed 310
Helix 49	49	G	52	61	Right-handed alpha
Helix 50	50	G	61	67	Right-handed alpha
Helix 51	51	G	79	88	Right-handed alpha
Helix 52	52	G	90	94	Right-handed 310
Helix 53	53	G	109	115	Right-handed alpha
Helix 54	54	G	151	169	Right-handed alpha
Helix 55	55	G	189	198	Right-handed alpha
Helix 56	56	H	31	34	Right-handed 310
Helix 57	57	H	52	61	Right-handed alpha
Helix 58	58	H	61	67	Right-handed alpha
Helix 59	59	H	79	88	Right-handed alpha
Helix 60	60	H	90	94	Right-handed 310
Helix 61	61	H	109	115	Right-handed alpha
Helix 62	62	H	151	168	Right-handed alpha
Helix 63	63	H	186	198	Right-handed alpha
Helix 64	64	I	31	34	Right-handed 310
Helix 65	65	I	52	67	Right-handed alpha
Helix 66	66	I	79	88	Right-handed alpha
Helix 67	67	I	90	94	Right-handed 310
Helix 68	68	I	109	115	Right-handed alpha
Helix 69	69	I	151	169	Right-handed alpha
Helix 70	70	I	190	198	Right-handed alpha
Helix 71	71	J	31	34	Right-handed 310
Helix 72	72	J	52	67	Right-handed alpha
Helix 73	73	J	79	88	Right-handed alpha
Helix 74	74	J	90	94	Right-handed 310
Helix 75	75	J	109	115	Right-handed alpha
Helix 76	76	J	151	169	Right-handed alpha
Helix 77	77	J	186	198	Right-handed alpha

There are 22 sheets in PDB entry 1QMV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	21	first strand
Strand 2	A	24	29	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	144	first strand
Strand 2	A	127	132	anti-parallel
Strand 3	A	37	42	anti-parallel
Strand 4	A	70	76	parallel
Strand 5	A	102	105	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	21	first strand
Strand 2	B	24	29	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	144	first strand
Strand 2	B	127	132	anti-parallel
Strand 3	B	37	42	anti-parallel
Strand 4	B	70	76	parallel
Strand 5	B	102	105	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	21	first strand
Strand 2	C	24	29	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	144	first strand
Strand 2	C	127	132	anti-parallel
Strand 3	C	37	42	anti-parallel
Strand 4	C	70	76	parallel
Strand 5	C	102	105	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	21	first strand
Strand 2	D	24	29	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	144	first strand
Strand 2	D	127	132	anti-parallel
Strand 3	D	37	42	anti-parallel
Strand 4	D	70	76	parallel
Strand 5	D	102	105	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	21	first strand
Strand 2	E	24	29	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	144	first strand
Strand 2	E	127	132	anti-parallel
Strand 3	E	37	42	anti-parallel
Strand 4	E	70	76	parallel
Strand 5	E	102	105	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	21	first strand
Strand 2	F	24	29	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	138	144	first strand
Strand 2	F	127	132	anti-parallel
Strand 3	F	37	42	anti-parallel
Strand 4	F	70	76	parallel
Strand 5	F	102	105	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	21	first strand
Strand 2	G	24	29	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	138	144	first strand
Strand 2	G	127	132	anti-parallel
Strand 3	G	37	42	anti-parallel
Strand 4	G	70	76	parallel
Strand 5	G	102	105	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	21	first strand
Strand 2	H	24	29	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	144	first strand
Strand 2	H	127	132	anti-parallel
Strand 3	H	37	42	anti-parallel
Strand 4	H	70	76	parallel
Strand 5	H	102	105	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	21	first strand
Strand 2	I	24	29	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	138	144	first strand
Strand 2	I	127	132	anti-parallel
Strand 3	I	37	42	anti-parallel
Strand 4	I	70	76	parallel
Strand 5	I	102	105	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	170	172	first strand
Strand 2	I	182	184	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	16	21	first strand
Strand 2	J	24	29	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	138	144	first strand
Strand 2	J	127	132	anti-parallel
Strand 3	J	37	42	anti-parallel
Strand 4	J	70	76	parallel
Strand 5	J	102	105	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	170	172	first strand
Strand 2	J	182	184	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1QMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
1QMV