Analysis of interatomic Contacts of Structural Units in PDB entry:
1QMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QMY entry

There are 3 chains in PDB entry 1QMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 29ASP 184
B
 MET 29ASP 184
C
 MET 29ASP 184
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1QMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A1
A
50 64Right-handed alpha
Helix 2
A3
A
68 73Right-handed alpha
Helix 3
A4
A
78 91Right-handed alpha
Helix 4
A5
A
99 108Right-handed alpha
Helix 5
A6
A
109 111Right-handed 310
Helix 6
A7
A
133 135Right-handed 310
Helix 7
A8
A
173 175Right-handed 310
Helix 8
B1
B
50 64Right-handed alpha
Helix 9
B2
B
65 67Right-handed 310
Helix 10
B3
B
68 73Right-handed alpha
Helix 11
B4
B
78 91Right-handed alpha
Helix 12
B5
B
99 108Right-handed alpha
Helix 13
B6
B
109 111Right-handed 310
Helix 14
B7
B
133 135Right-handed 310
Helix 15
B8
B
173 175Right-handed 310
Helix 16
C1
C
50 63Right-handed alpha
Helix 17
C3
C
68 73Right-handed alpha
Helix 18
C4
C
78 91Right-handed alpha
Helix 19
C5
C
99 108Right-handed alpha
Helix 20
C6
C
109 111Right-handed 310
Helix 21
C7
C
133 135Right-handed 310
Helix 22
C8
C
173 175Right-handed 310
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There are 9 sheets in PDB entry 1QMY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
38 40anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
124 126parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
160 163anti-parallel
Strand 3
A
148 153anti-parallel
Strand 4
A
137 144anti-parallel
Strand 5
A
179 182anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
38 40anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 117first strand
Strand 2
B
124 126parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 169first strand
Strand 2
B
160 163anti-parallel
Strand 3
B
148 153anti-parallel
Strand 4
B
137 144anti-parallel
Strand 5
B
179 182anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 32first strand
Strand 2
C
38 40anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
115 117first strand
Strand 2
C
124 126parallel
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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
166 169first strand
Strand 2
C
158 163anti-parallel
Strand 3
C
148 155anti-parallel
Strand 4
C
137 144anti-parallel
Strand 5
C
179 182anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il