Analysis of interatomic Contacts of Structural Units in PDB entry:
1QOL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QOL entry

There are 8 chains in PDB entry 1QOL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 29LYS 201
B
 MET 29LYS 201
C
 MET 29LYS 201
D
 MET 29LYS 201
E
 MET 29LYS 201
F
 MET 29LYS 201
G
 MET 29LYS 201
H
 MET 29LYS 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 1QOL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 64Right-handed alpha
Helix 2
2
A
65 67Right-handed 310
Helix 3
3
A
68 73Right-handed alpha
Helix 4
4
A
78 91Right-handed alpha
Helix 5
5
A
99 105Right-handed alpha
Helix 6
6
A
106 111Right-handed 310
Helix 7
7
A
133 135Right-handed 310
Helix 8
8
A
173 175Right-handed 310
Helix 9
9
B
50 64Right-handed alpha
Helix 10
10
B
65 67Right-handed 310
Helix 11
11
B
68 73Right-handed alpha
Helix 12
12
B
78 91Right-handed alpha
Helix 13
13
B
99 108Right-handed alpha
Helix 14
14
B
109 111Right-handed 310
Helix 15
15
B
133 135Right-handed 310
Helix 16
16
B
173 175Right-handed 310
Helix 17
17
C
50 64Right-handed alpha
Helix 18
18
C
68 73Right-handed alpha
Helix 19
19
C
78 91Right-handed alpha
Helix 20
20
C
99 106Right-handed alpha
Helix 21
21
C
133 135Right-handed 310
Helix 22
22
C
173 175Right-handed 310
Helix 23
23
C
191 196Right-handed alpha
Helix 24
24
D
50 64Right-handed alpha
Helix 25
25
D
68 73Right-handed alpha
Helix 26
26
D
78 91Right-handed alpha
Helix 27
27
D
99 106Right-handed alpha
Helix 28
28
D
107 111Right-handed 310
Helix 29
29
D
133 135Right-handed 310
Helix 30
30
D
173 175Right-handed 310
Helix 31
31
D
191 195Right-handed 310
Helix 32
32
E
50 64Right-handed alpha
Helix 33
33
E
68 73Right-handed alpha
Helix 34
34
E
78 91Right-handed alpha
Helix 35
35
E
99 107Right-handed alpha
Helix 36
36
E
108 111Right-handed 310
Helix 37
37
E
133 137Right-handed 310
Helix 38
38
E
173 175Right-handed 310
Helix 39
39
F
50 64Right-handed alpha
Helix 40
40
F
65 67Right-handed 310
Helix 41
41
F
68 73Right-handed alpha
Helix 42
42
F
78 91Right-handed alpha
Helix 43
43
F
99 107Right-handed alpha
Helix 44
44
F
173 175Right-handed 310
Helix 45
45
G
50 64Right-handed alpha
Helix 46
46
G
68 74Right-handed alpha
Helix 47
47
G
78 91Right-handed alpha
Helix 48
48
G
99 107Right-handed alpha
Helix 49
49
G
133 135Right-handed 310
Helix 50
50
G
173 177Right-handed 310
Helix 51
51
G
192 198Right-handed alpha
Helix 52
52
H
50 64Right-handed alpha
Helix 53
53
H
68 73Right-handed alpha
Helix 54
54
H
78 90Right-handed alpha
Helix 55
55
H
99 107Right-handed alpha
Helix 56
56
H
133 137Right-handed 310
Helix 57
57
H
173 175Right-handed 310
Helix 58
58
H
192 198Right-handed alpha
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There are 21 sheets in PDB entry 1QOL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
38 40anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
124 126parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
158 163anti-parallel
Strand 3
A
149 155anti-parallel
Strand 4
A
137 143anti-parallel
Strand 5
A
179 182anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
38 40anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 117first strand
Strand 2
B
124 126parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 162first strand
Strand 2
B
150 155anti-parallel
Strand 3
B
139 142anti-parallel
Strand 4
B
177 180anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 32first strand
Strand 2
C
38 40anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
115 117first strand
Strand 2
C
124 126parallel
Strand 3
C
179 182anti-parallel
Strand 4
C
137 144anti-parallel
Strand 5
C
148 155anti-parallel
Strand 6
C
158 163anti-parallel
Strand 7
C
166 169anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 32first strand
Strand 2
D
38 40anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
115 117first strand
Strand 2
D
124 126parallel
Strand 3
D
179 182anti-parallel
Strand 4
D
137 144anti-parallel
Strand 5
D
148 155anti-parallel
Strand 6
D
158 163anti-parallel
Strand 7
D
166 169anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
30 32first strand
Strand 2
E
38 40anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
115 117first strand
Strand 2
E
124 126parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
166 169first strand
Strand 2
E
160 163anti-parallel
Strand 3
E
150 153anti-parallel
Strand 4
E
139 142anti-parallel
Strand 5
E
177 181anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
30 32first strand
Strand 2
F
38 40anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
115 117first strand
Strand 2
F
124 126parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
166 169first strand
Strand 2
F
160 163anti-parallel
Strand 3
F
150 153anti-parallel
Strand 4
F
139 142anti-parallel
Strand 5
F
177 180anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
30 32first strand
Strand 2
G
38 40anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
115 117first strand
Strand 2
G
124 126parallel
Strand 3
G
179 181anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
139 143first strand
Strand 2
G
149 153anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
30 32first strand
Strand 2
H
38 40anti-parallel
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There are 7 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
115 117first strand
Strand 2
H
124 126parallel
Strand 3
H
177 181anti-parallel
Strand 4
H
139 143anti-parallel
Strand 5
H
149 153anti-parallel
Strand 6
H
160 163anti-parallel
Strand 7
H
166 169anti-parallel
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