Analysis of interatomic Contacts of Structural Units in PDB entry:
1QPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1QPQ entry

There are 6 chains in PDB entry 1QPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2MET 285
B
 GLY 502MET 785
C
 GLY 1002MET 1285
D
 GLY 1502MET 1785
E
 GLY 2002MET 2285
F
 GLY 2502MET 2785
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 1QPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 23Right-handed alpha
Helix 2
2
A
29 34Right-handed alpha
Helix 3
3
A
56 67Right-handed alpha
Helix 4
4
A
69 71Right-handed 310
Helix 5
5
A
97 127Right-handed alpha
Helix 6
6
A
146 156Right-handed alpha
Helix 7
7
A
173 179Right-handed alpha
Helix 8
8
A
182 192Right-handed alpha
Helix 9
9
A
205 214Right-handed alpha
Helix 10
10
A
226 239Right-handed alpha
Helix 11
11
A
256 262Right-handed alpha
Helix 12
12
A
270 272Right-handed 310
Helix 13
13
B
505 523Right-handed alpha
Helix 14
14
B
529 534Right-handed alpha
Helix 15
15
B
556 567Right-handed alpha
Helix 16
16
B
569 571Right-handed 310
Helix 17
17
B
597 627Right-handed alpha
Helix 18
18
B
646 655Right-handed alpha
Helix 19
19
B
673 679Right-handed alpha
Helix 20
20
B
682 692Right-handed alpha
Helix 21
21
B
705 712Right-handed alpha
Helix 22
22
B
726 739Right-handed alpha
Helix 23
23
B
756 762Right-handed alpha
Helix 24
24
B
770 772Right-handed 310
Helix 25
25
C
1005 1023Right-handed alpha
Helix 26
26
C
1029 1034Right-handed alpha
Helix 27
27
C
1056 1067Right-handed alpha
Helix 28
28
C
1069 1071Right-handed 310
Helix 29
29
C
1097 1127Right-handed alpha
Helix 30
30
C
1146 1155Right-handed alpha
Helix 31
31
C
1173 1179Right-handed alpha
Helix 32
32
C
1182 1192Right-handed alpha
Helix 33
33
C
1205 1214Right-handed alpha
Helix 34
34
C
1226 1239Right-handed alpha
Helix 35
35
C
1256 1262Right-handed alpha
Helix 36
36
C
1270 1272Right-handed 310
Helix 37
37
D
1505 1523Right-handed alpha
Helix 38
38
D
1529 1534Right-handed alpha
Helix 39
39
D
1556 1566Right-handed alpha
Helix 40
40
D
1569 1571Right-handed 310
Helix 41
41
D
1597 1627Right-handed alpha
Helix 42
42
D
1646 1656Right-handed alpha
Helix 43
43
D
1673 1679Right-handed alpha
Helix 44
44
D
1682 1692Right-handed alpha
Helix 45
45
D
1705 1712Right-handed alpha
Helix 46
46
D
1726 1739Right-handed alpha
Helix 47
47
D
1756 1762Right-handed alpha
Helix 48
48
D
1770 1772Right-handed 310
Helix 49
49
E
2005 2023Right-handed alpha
Helix 50
50
E
2029 2034Right-handed alpha
Helix 51
51
E
2056 2067Right-handed alpha
Helix 52
52
E
2069 2071Right-handed 310
Helix 53
53
E
2097 2127Right-handed alpha
Helix 54
54
E
2146 2155Right-handed alpha
Helix 55
55
E
2173 2179Right-handed alpha
Helix 56
56
E
2182 2192Right-handed alpha
Helix 57
57
E
2205 2214Right-handed alpha
Helix 58
58
E
2226 2239Right-handed alpha
Helix 59
59
E
2256 2262Right-handed alpha
Helix 60
60
E
2270 2272Right-handed 310
Helix 61
61
F
2505 2523Right-handed alpha
Helix 62
62
F
2529 2534Right-handed alpha
Helix 63
63
F
2556 2567Right-handed alpha
Helix 64
64
F
2569 2571Right-handed 310
Helix 65
65
F
2597 2627Right-handed alpha
Helix 66
66
F
2646 2656Right-handed alpha
Helix 67
67
F
2673 2679Right-handed alpha
Helix 68
68
F
2682 2692Right-handed alpha
Helix 69
69
F
2705 2714Right-handed alpha
Helix 70
70
F
2726 2739Right-handed alpha
Helix 71
71
F
2756 2762Right-handed alpha
Helix 72
72
F
2770 2772Right-handed 310
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There are 14 sheets in PDB entry 1QPQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
40 47anti-parallel
Strand 3
A
89 96anti-parallel
Strand 4
A
72 77anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
266 268parallel
Strand 3
A
244 248parallel
Strand 4
A
218 222parallel
Strand 5
A
198 202parallel
Strand 6
A
169 171parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
781 784first strand
Strand 2
B
540 547anti-parallel
Strand 3
B
589 596anti-parallel
Strand 4
B
572 577anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
634 636first strand
Strand 2
B
766 768parallel
Strand 3
B
744 748parallel
Strand 4
B
718 722parallel
Strand 5
B
698 702parallel
Strand 6
B
669 671parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1281 1284first strand
Strand 2
C
1040 1047anti-parallel
Strand 3
C
1089 1096anti-parallel
Strand 4
C
1072 1077anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1134 1136first strand
Strand 2
C
1266 1268parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1169 1171first strand
Strand 2
C
1198 1202parallel
Strand 3
C
1218 1222parallel
Strand 4
C
1244 1248parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1781 1784first strand
Strand 2
D
1540 1547anti-parallel
Strand 3
D
1589 1596anti-parallel
Strand 4
D
1572 1577anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1634 1636first strand
Strand 2
D
1766 1768parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1669 1671first strand
Strand 2
D
1698 1702parallel
Strand 3
D
1718 1722parallel
Strand 4
D
1744 1748parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2281 2284first strand
Strand 2
E
2040 2047anti-parallel
Strand 3
E
2089 2096anti-parallel
Strand 4
E
2072 2077anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2134 2136first strand
Strand 2
E
2266 2268parallel
Strand 3
E
2244 2248parallel
Strand 4
E
2218 2222parallel
Strand 5
E
2198 2202parallel
Strand 6
E
2169 2171parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2781 2784first strand
Strand 2
F
2540 2547anti-parallel
Strand 3
F
2589 2596anti-parallel
Strand 4
F
2572 2577anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2634 2636first strand
Strand 2
F
2766 2768parallel
Strand 3
F
2744 2748parallel
Strand 4
F
2718 2722parallel
Strand 5
F
2698 2702parallel
Strand 6
F
2669 2671parallel
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